maximize_clock_tree_log_likelihood: Tree reconstruction via maximum parsimony
In Hoffmann-Lab/PhyloEpiGenomics: What the Package Does (One Line, Title Case)
maximize_clock_tree_log_likelihood R Documentation
Tree reconstruction via maximum parsimony
Description
Determines the best fitting tree topology by maximum parsimony for given data
Usage
maximize_clock_tree_log_likelihood(
states_alignment,
tree,
Q,
pi,
initial_depth,
is_states_alignment_compact = F
)
Arguments
states_table
Matrix or data frame containing numericals representing an alignment of states with sites as rows and species/strains as columns
rooted_trees
List of rooted tree topologies to be analyzed
Examples
test
Hoffmann-Lab/PhyloEpiGenomics documentation built on Feb. 12, 2023, 9:06 p.m.
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| maximize_clock_tree_log_likelihood | R Documentation |
Tree reconstruction via maximum parsimony
Description
Determines the best fitting tree topology by maximum parsimony for given data
Usage
maximize_clock_tree_log_likelihood( states_alignment, tree, Q, pi, initial_depth, is_states_alignment_compact = F )
Arguments
states_table |
Matrix or data frame containing numericals representing an alignment of states with sites as rows and species/strains as columns |
rooted_trees |
List of rooted tree topologies to be analyzed |
Examples
test
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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