tests/testthat/_snaps/exp_links.md

In HopkinsIDD/phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

exp_links is deprecated

Code
  expect_equal(exp_links(eta = 1, chi = 1, rho = 1, M = 10, R = NULL, assumption = "stsl"),
  5)
Warning <lifecycle_warning_deprecated>
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
Message <simpleMessage>
  Calculating expected number of links assuming single-transmission and single-linkage
Warning <lifecycle_warning_deprecated>
  `obs_pairs_stsl()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_stsl()` instead.
  The `eta` argument of `obs_pairs_stsl()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_stsl()` instead.
  The `chi` argument of `obs_pairs_stsl()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_stsl()` instead.

HopkinsIDD/phylosamp documentation built on May 28, 2023, 3:21 a.m.