phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

sampleize is deprecated

Code
  expect_error(samplesize(eta = 0, chi = 0.995, N = 100, R = 1, phi = 0.75))
Warning <lifecycle_warning_deprecated>
  `samplesize()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_samplesize()` instead.
  The `eta` argument of `samplesize()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_samplesize()` instead.
  The `chi` argument of `samplesize()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_samplesize()` instead.
  The `phi` argument of `samplesize()` is deprecated as of phylosamp 1.0.0.
  i Please use the `tdr` argument of `translink_samplesize()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
  `prob_trans_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_mtml()` instead.
  The `eta` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_mtml()` instead.
  The `chi` argument of `prob_trans_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_mtml()` instead.
  `exp_links()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs()` instead.
  The `eta` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs()` instead.
  The `chi` argument of `exp_links()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs()` instead.
  `obs_pairs_mtml()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_expected_links_obs_mtml()` instead.
  The `eta` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_expected_links_obs_mtml()` instead.
  The `chi` argument of `obs_pairs_mtml()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_expected_links_obs_mtml()` instead.
HopkinsIDD/phylosamp documentation built on May 28, 2023, 3:21 a.m.
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HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies

tests/testthat/_snaps/samplesize.md
In HopkinsIDD/phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

sampleize is deprecated

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HopkinsIDD/phylosamp Sample Size Calculations for Molecular and Phylogenetic Studies

tests/testthat/_snaps/samplesize.md In HopkinsIDD/phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

sampleize is deprecated

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HopkinsIDD/phylosamp
Sample Size Calculations for Molecular and Phylogenetic Studies

tests/testthat/_snaps/samplesize.md
In HopkinsIDD/phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies
