tests/testthat/_snaps/truediscoveryrate.md

In HopkinsIDD/phylosamp: Sample Size Calculations for Molecular and Phylogenetic Studies

truediscoveryrate is deprecated

Code
  expect_equal(truediscoveryrate(eta = 1, chi = 1, rho = 1, M = 10, R = NULL,
    assumption = "stsl"), 1)
Warning <lifecycle_warning_deprecated>
  `truediscoveryrate()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_tdr()` instead.
  The `eta` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_tdr()` instead.
  The `chi` argument of `truediscoveryrate()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_tdr()` instead.
Message <simpleMessage>
  Calculating true discovery rate assuming single-transmission and single-linkage
Warning <lifecycle_warning_deprecated>
  `prob_trans_stsl()` was deprecated in phylosamp 1.0.0.
  i Please use `translink_prob_transmit_stsl()` instead.
  The `eta` argument of `prob_trans_stsl()` is deprecated as of phylosamp 1.0.0.
  i Please use the `sensitivity` argument of `translink_prob_transmit_stsl()` instead.
  The `chi` argument of `prob_trans_stsl()` is deprecated as of phylosamp 1.0.0.
  i Please use the `specificity` argument of `translink_prob_transmit_stsl()` instead.

HopkinsIDD/phylosamp documentation built on May 28, 2023, 3:21 a.m.