combine_output: combine_output

In HumanExposure/SHEDSDevel: The SHEDS-HT model for estimating human exposure to chemicals.

Description

combine_output is a post-processing tool that extracts selected statistics (those specified in the 'metrics' argument) from the 'allstats' file for each chemical in a single model run, and combines them onto out.file.

Usage

combine_output(run.name = specs$run.name, out.file = "SHEDSOutFCS.csv",
  metrics = c("5%", "50%", "75%", "95%", "99%", "mean", "sd"))

Arguments

run.name	default = name of last run (in current R session)
out.file	default="SHEDSOutFCS.csv"
metrics	the summary statsistics to be pulled. default = c("5%", "50%", "75%", "95%", "99%","mean","sd")

Details

In a multichemical run, SHEDS creates separate output files for each chemical. If the analyst wants to compare exposure or dose metrics across chemicals, use combine_output to put the relevant information for all chemicals together on one file.

Value

finaldata A R object that has "exp.dermal", "exp.ingest", m"exp.inhal", "dose.inhal", "dose.intake", "abs.dermal.ug", "abs.ingest.ug", "abs.inhal.ug", "abs.tot.ug", "abs.tot.mgkg", "ddd.mass" for the chemcial of question. This is tablated for the "5%", "50%", "75%", "95%", "99%", quantile of exposure as well as the mean and sd
"finaldata,paste0("output/",run.name,"/",out.file.csv") this is the CSV of finaldata

Author(s)

Kristin Isaacs, Graham Glen

HumanExposure/SHEDSDevel documentation built on Oct. 30, 2019, 6:49 p.m.