genautocorr: genautocorr setup

Description Usage Arguments Details Author(s)

Description

Calculates genetic autocorrelation for later linkage disequilibrium filtering.

Usage

1
genautocorr(vcffile = NULL, vcfR = NULL, biallelicsnps = TRUE)

Arguments

vcffile

A variant call file (vcf) path. This VCF will be converted to an object of class vcfR.

Details

From an object of class vcfR, calculate the genetic autocorrelation as the estimate of linkage disequilibrium by genetic distance.

Author(s)

Bob Verity & Nick Brazeau


IDEELResearch/SeekDeepRANN documentation built on July 17, 2019, 3:21 p.m.