Description Usage Arguments Details Author(s)
Calculates genetic autocorrelation for later linkage disequilibrium filtering.
1 | genautocorr(vcffile = NULL, vcfR = NULL, biallelicsnps = TRUE)
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vcffile |
A variant call file (vcf) path. This VCF will be converted to an object of class |
From an object of class vcfR
, calculate the genetic autocorrelation as the estimate of linkage disequilibrium by genetic distance.
Bob Verity & Nick Brazeau
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