Files in IDPT7810/practical-data-analysis
Practical Biological Data Analysis in R/RStudio
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/data.r
R/pbda.r
R/update-pbda.R
R/zzz.r
README.Rmd
README.md
_pkgdown.yml
data-raw/NCI60.R
data-raw/brauer-gene-exp.R
data-raw/cluster-mat.R
data-raw/encode-tf-data.r
data-raw/esc-scrnaseq.R
data-raw/hg19-bed.r
data-raw/missing-data.R
data-raw/mtcars_tbl.r
data-raw/qpcr-data-names-384.R
data-raw/qpcr-data-names.r
data-raw/tx-rates.R
data-raw/yeast-prot-prop.R
data/brauer_gene_exp.rda
data/cc_genes.rda
data/clust_mat.rda
data/drug_resistant2_coldata.rda
data/drug_resistant2_counts.rda
data/drug_resistant_coldata.rda
data/drug_resistant_counts.rda
data/esc_mat.rda
data/missing.rda
data/missing_ex.rda
data/mtcars_tbl.rda
data/nci60.rda
data/qpcr_data.rda
data/qpcr_names.rda
data/tx_rates.rda
data/yeast_prot_prop.rda
inst/extdata/clinvar_2000.vcf.gz
inst/extdata/david.txt.gz
inst/extdata/ensg_tibble.csv.gz
inst/extdata/gene_tibble.csv.gz
inst/extdata/gene_tibble.txt.gz
inst/extdata/gene_tibble_v.txt.gz
inst/extdata/genes_drerio.csv.gz
inst/extdata/hg19_genes.bed.gz
inst/extdata/hg19_genome.txt.gz
inst/extdata/noexcel.png
inst/extdata/pbmc_gene_bc_matrices/hg19/barcodes.tsv.gz
inst/extdata/pbmc_gene_bc_matrices/hg19/genes.tsv.gz
inst/extdata/pbmc_gene_bc_matrices/hg19/matrix.mtx.gz
inst/extdata/qpcr-data-384.csv.gz
inst/extdata/qpcr-names-384.csv.gz
inst/extdata/res_class4.rds
inst/extdata/tumor_gene_bc_matrices/hg19/barcodes.tsv.gz
inst/extdata/tumor_gene_bc_matrices/hg19/genes.tsv.gz
inst/extdata/tumor_gene_bc_matrices/hg19/matrix.mtx.gz
inst/extdata/wgEncodeRegTfbsClusteredV3.bed.gz
man/brauer_gene_exp.Rd
man/clust_mat.Rd
man/esc_mat.Rd
man/missing_ex.Rd
man/mtcars_tbl.Rd
man/nci60.Rd
man/pbda.Rd
man/qpcr_data.Rd
man/qpcr_names.Rd
man/tx_rates.Rd
man/update_pbda.Rd
man/yeast_prot_prop.Rd
practical-data-analysis.Rproj
vignettes/.gitignore
vignettes/assignments.Rmd
vignettes/class-1.Rmd
vignettes/class-10.Rmd
vignettes/class-11.Rmd
vignettes/class-12.Rmd
vignettes/class-2.Rmd
vignettes/class-3.Rmd
vignettes/class-5.Rmd
vignettes/class-6.Rmd
vignettes/class-7.Rmd
vignettes/class-8.Rmd
vignettes/class-9.Rmd
vignettes/exercises-2.Rmd
vignettes/img/assignment-2-metagene.ai
vignettes/img/assignment-2-metagene.png
vignettes/img/assignment-2-metagene_plot.png
vignettes/img/class-1-data-import.png
vignettes/img/class-1-plot-1.png
vignettes/img/class-1-plot_label-1.png
vignettes/img/class-1-qpcr_plot-1.png
vignettes/img/class-2-cb-1.png
vignettes/img/class-2-cowplot-1.png
vignettes/img/class-2-cowplot-2.png
vignettes/img/class-2-facets-1.png
vignettes/img/class-2-figure-1.png
vignettes/img/class-2-figure_title-1.png
vignettes/img/class-2-plot_random-1.png
vignettes/img/class-2-unnamed-chunk-1-1.png
vignettes/img/class-2-unnamed-chunk-5-1.png
vignettes/img/class-2-unnamed-chunk-6-1.png
vignettes/img/class-2-unnamed-chunk-7-1.png
vignettes/img/class-2-viridis-1.png
vignettes/img/class-3-brauer_plot-1.png
vignettes/img/class-4-pca-1.png
vignettes/img/class-4-se.png
vignettes/img/class-4-unnamed-chunk-4-1.png
vignettes/img/class-4-unnamed-chunk-7-1.png
vignettes/img/class-4-unnamed-chunk-7-2.png
vignettes/img/class-4-unnamed-chunk-8-1.png
vignettes/img/class-4-unnamed-chunk-8-2.png
vignettes/img/class-4-unnamed-chunk-9-1.png
vignettes/img/class-5-david-1.png
vignettes/img/jackstraw.png
vignettes/img/pca.png
vignettes/img/plate.jpg
vignettes/problem-set-1.Rmd
vignettes/problem-set-2.Rmd
vignettes/problem-set-3.Rmd
vignettes/problem-set-4.Rmd
vignettes/problem-set-final.Rmd
vignettes/slide-styles.pptx
