Man pages for IFIproteomics/E2Predictor
| changeConfiguration | changeConfigutation allows changes at E2Predictor... |
| contingencyTable | contingencyTable |
| countCharOccurrences | countCharOccurrences counts the presence of a given character... |
| evaluate_ML | evaluate_ML |
| exec.netMHCpan | exec.netMHCpan executes the command netMHCpan for a set of... |
| get_training_sample | get.training.sample |
| initConfiguration | initConfiguration initializes E2Predictor configuration |
| load_data_modeling | load_data_modeling |
| merge_omics | merge.omics merges proteomics, genomics, and ligandomics data... |
| mkdir | mkdir This recursively create a directory if it does not... |
| predictNeoEpitopes | predictNeoEpitopes predicts the most likely alleles for... |
| prelim_ML | prelim.ML |
| prepare_data_modeling | prepare_data_modeling |
| proteomics.select.condition | proteomics.select.condition selects the quantitative data... |
| read_batch_in_folder | read_batch_in_folder reads several files from a folder, and... |
| read_file_add_filename | read_file_add_filename reads a file and attaches a column... |
| read_file_crawler | read_file_crawler reads a file produced by crawler script and... |
| read_file_protein | read_file_protein reads a file with protein readings |
| read_file_RPKM | read_file_RPKM reads a file with RPKM readings of a SINGLE... |
| read_ligands_PEAKS | read_ligands_PEAKS reads and combines PEAKS identifications... |
| read_the_file | read_the_file is a wrapper of read_excel and read_delim (from... |
| retrieve_data_modeling | retrieve.data.modeling |
