initConfiguration: initConfiguration initializes E2Predictor configuration

In IFIproteomics/E2Predictor:

Description

initConfiguration initializes E2Predictor configuration

Usage

  initConfiguration(netMHCpath = "/Users/napedro/external_sources/netMHC-4.0/netMHC",
  working.path = getwd(), hla_alleles = list(JY = c("A*02:01", "B*07:02",
  "C*07:02"), LCLC.103H = c("A*03:01", "B*07:02", "C*07:02"), COLO.699.N =
  c("A*02:01", "B*07:02", "C*07:02", "C*06:02"), MEL.526 = c("A*02:01",
  "B*15:01", "C*07:02"), HEK293 = c("A*03:01", "B*07:02", "C*07:02"), MEL.HO =
  c("A*03:01", "B*07:02", "B*14:02", "C*07:02", "C*08:05"), NIH.OVCAR.3 =
  c("A*02:01", "A*29:02", "B*07:02", "B*58:01", "C*07:02", "C*07:19"), SK.MEL.37
  = c("A*02:01", "B*07:02", "B*56:01", "C*07:02", "C*03:04"), K562A2 =
  c("A*02:01", "C*05:01", "C*03:04")))

Arguments

netMHCpath	path to netMHC 4.0 (only necessary if new allele predictions are needed)
working.path	by default the current working path
hla_alleles	list of cell.line - alleles

IFIproteomics/E2Predictor documentation built on May 8, 2019, 10:54 a.m.