processPreds: Prepare and tidy prediction results

In IMB-Computational-Genomics-Lab/scPred: scPred - Single cell prediction using singular value decomposition and machine learning classification

Description

Formats prediction results with true values (if known) contained in metadata. Optionally, adds an extra column for new prediction labels

Usage

processPreds(object, true, pred = NULL)

Arguments

object	scPred object
true	Column name in predMeta slot that corresponds to the true known classes
pred	Column name in predMeta slot that corresponds to the predicted classes if they have been assigned independently from the scPredict() function

Value

A list with

• predictions. A dataframe with two extra columns: true and prediction columns from the prediction metadata and/or from class labels assigned by scPred

• true. Renamed true name column

• pred. Renamed pred name column

Author(s)

Jos<c3><a9> Alquicira Hern<c3><a1>ndez

IMB-Computational-Genomics-Lab/scPred documentation built on Jan. 11, 2020, 7:37 a.m.