plotEigen: Plot PCA

In IMB-Computational-Genomics-Lab/scPred: scPred - Single cell prediction using singular value decomposition and machine learning classification

Description

Plots PCA with raw results or group by a variable

Usage

plotEigen(object, group = NULL, pc1 = 1, pc2 = 2, predGroup = NULL,
  geom = c("points", "density_2d", "both"), plotPred = TRUE)

Arguments

object	scPred object
group	Groupping variable included in metadata
predGroup	Equivalent of group parameter for prediction dataset. Projection and predMeta slots must be filled
geom	ggplot geom
pc	Vector of length 2 with the dimensions to plot

IMB-Computational-Genomics-Lab/scPred documentation built on Jan. 11, 2020, 7:37 a.m.