Files in IMBEIbioinformatics/BIUMmisc
A collection of functions and scripts commonly used by the BIUM-MZ Core Facility and the Bioinformatics group at the IMBEI
.Rbuildignore
.github/workflows/R-CMD-check.yaml
BIUMmisc.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/BIUMmisc-pkg.R
R/create_folder_structure.R
R/de_funcs.R
R/misc.R
R/older_funcs/deanalysis.R
R/older_funcs/qcfuncs.R
R/older_funcs/tpm.R
R/report_helpers.R
R/salmon_runner.R
R/samplesheet_management.R
R/sessioninfo_extra.R
R/timestampr.R
README.md
_pkgdown.yml
man/BIUMmisc-pkg.Rd
man/beautify_GO_table.Rd
man/beautify_Reactome_table.Rd
man/count_up_till_death.Rd
man/create_DEresults.Rd
man/create_folder_structure.Rd
man/create_link_reactome.Rd
man/dds_gencode_to_ensembl.Rd
man/deseq_normcounts_with_info.Rd
man/deseq_tpm_with_info.Rd
man/exportr.Rd
man/fortify_annotations.Rd
man/matmetmaker_RNAseqbulk.Rd
man/matmetmaker_RNAseqsinglecell.Rd
man/plot_totcounts.Rd
man/resuset_to_gtl.Rd
man/run_salmon.Rd
man/samplesheet_creator.Rd
man/sepguesser.Rd
man/sessioninfo_extra.Rd
tests/testthat.R
tests/testthat/test-yolo.R
vignettes/BIUMmisc_DE.Rmd
vignettes/BIUMmisc_manual.Rmd
