resuset_to_gtl: Convert a resuSet into a GeneTonicList

In IMBEIbioinformatics/BIUMmisc: A collection of functions and scripts commonly used by the BIUM-MZ Core Facility and the Bioinformatics group at the IMBEI

Convert a resuSet into a GeneTonicList

Description

Convert a resuSet into a GeneTonicList object

Usage

resuset_to_gtl(resuSet, result_name, which_enrich = "topGO_tbl", dds, anno_df)

Arguments

resuSet	A list, provided in the format expected by the resuSet specifications
result_name	A character, specifying for which result name in the resuSet object the conversion should be performed
which_enrich	Character string, specifying which enrichment results to use. Currently defaults to "topGO_tbl", will be extended to other formats - TODO
dds	A DESeqDataset object, meaningfully related/matched to the resuSet object.
anno_df	A data.frame as specified in the requirements expected by GeneTonic, i.e. where at least the columns gene_id and gene_name are specified

Value

A GeneTonicList object, ready to be provided to the GeneTonic functions

Examples

# TODO

IMBEIbioinformatics/BIUMmisc documentation built on June 12, 2025, 10:50 p.m.