deseq_normcounts_with_info: Normalized counts table, with extra info
In IMBEIbioinformatics/BIUMmisc: A collection of functions and scripts commonly used by the BIUM-MZ Core Facility and the Bioinformatics group at the IMBEI
deseq_normcounts_with_info R Documentation
Normalized counts table, with extra info
Description
Normalized counts table, with extra info
Usage
deseq_normcounts_with_info(dds, extended_anno_df)
Arguments
dds
A DESeqDataSet object
extended_anno_df
An annotation data.frame with the following columns:
gene_id and gene_name (mandatory), and description (optional, can be
retrieved via biomaRt)
Value
A data.frame object, with the normalized counts and some additional
info on the features at hand
Examples
# TODO
# ext_anno <- merge(anno_df, anns, by.x = "gene_id", by.y = "ensembl_gene_id")
# ...
# writexl::write_xlsx(obj, "exceltable.xlsx")
IMBEIbioinformatics/BIUMmisc documentation built on June 12, 2025, 10:50 p.m.
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| deseq_normcounts_with_info | R Documentation |
Normalized counts table, with extra info
Description
Normalized counts table, with extra info
Usage
deseq_normcounts_with_info(dds, extended_anno_df)
Arguments
dds |
A DESeqDataSet object |
extended_anno_df |
An annotation data.frame with the following columns:
|
Value
A data.frame object, with the normalized counts and some additional info on the features at hand
Examples
# TODO
# ext_anno <- merge(anno_df, anns, by.x = "gene_id", by.y = "ensembl_gene_id")
# ...
# writexl::write_xlsx(obj, "exceltable.xlsx")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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