Man pages for IMBEIbioinformatics/BIUMmisc
A collection of functions and scripts commonly used by the BIUM-MZ Core Facility and the Bioinformatics group at the IMBEI
| beautify_GO_table | Beautifying an enrichment table with GO identifiers in it |
| beautify_Reactome_table | Beautifying an enrichment table with Reactome identifiers in... |
| BIUMmisc-pkg | BIUMmisc |
| count_up_till_death | Prints out the timestamp |
| create_DEresults | Title |
| create_folder_structure | Create folder structure |
| create_link_reactome | Create a link to Reactome |
| dds_gencode_to_ensembl | Gencode to ENSEMBL |
| deseq_normcounts_with_info | Normalized counts table, with extra info |
| deseq_tpm_with_info | TPM table with extended information |
| exportr | Export the components of a resuSet object |
| fortify_annotations | Fortify different set of annotations |
| matmetmaker_RNAseqbulk | M&Ms maker |
| matmetmaker_RNAseqsinglecell | Title TODO |
| plot_totcounts | Plot total number of counts |
| resuset_to_gtl | Convert a resuSet into a GeneTonicList |
| run_salmon | Generate commands to run salmon |
| samplesheet_creator | Title |
| sepguesser | Make an educated guess on the separator character |
| sessioninfo_extra | Title |
