plot: Default INLA plotting

In INBO-BMK/INLA: Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations

Description

Takes am inla object produced by inla and plot the results

Usage

 ## S3 method for class 'inla'
plot(x,
              plot.fixed.effects = TRUE,
              plot.lincomb = TRUE,
              plot.random.effects = TRUE,
              plot.hyperparameters = TRUE,
              plot.predictor = TRUE,
              plot.q = TRUE,
              plot.cpo = TRUE,
              plot.prior = FALSE, 
              single = FALSE,
              postscript = FALSE,
              pdf = FALSE,
              prefix = "inla.plots/figure-",
              intern = FALSE, 
              debug = FALSE, 
              ...)
 

Arguments

x	A fitted inla object produced by inla
plot.fixed.effects	Boolean indicating if posterior marginals for the fixed effects in the model should be plotted
plot.lincomb	Boolean indicating if posterior marginals for the linear combinations should be plotted
plot.random.effects	Boolean indicating if posterior mean and quantiles for the random effects in the model should be plotted
plot.hyperparameters	Boolean indicating if posterior marginals for the hyperparameters in the model should be plotted
plot.predictor	Boolean indicating if posterior mean and quantiles for the linear predictor in the model should be plotted
plot.q	Boolean indicating if precision matrix should be displayed
plot.cpo	Boolean indicating if CPO/PIT valuesshould be plotted
plot.prior	Plot also the prior density for the hyperparameters
single	Boolean indicating if there should be more than one plot per page (FALSE) or just one (TRUE)
postscript	Boolean indicating if postscript files should be produced instead
pdf	Boolean indicating if PDF files should be produced instead
prefix	The prefix for the created files. Additional numbering and suffix is added.
intern	Plot also the hyperparameters in its internal scale.
debug	Write some debug information
...	Additional arguments to postscript(), pdf() or dev.new().

Value

The return value is a list of the files created (if any).

Author(s)

Havard Rue [e-mail]

See Also

inla

Examples

## Not run: 
result = inla(...)
plot(result)
plot(result, single=TRUE)
plot(result, single=TRUE, pdf=TRUE, paper = "a4")
   
## End(Not run)
 

INBO-BMK/INLA documentation built on Dec. 4, 2019, 11:43 p.m.