Files in INBO-BMK/INLA
Functions which Allow to Perform Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations

.Rbuildignore
.gitignore
BinaryFiles
DESCRIPTION
NAMESPACE
R/Makefile
R/ar.R R/binary.R R/changelog.R R/collect.results.R R/compare.results.R R/contributed-1.R R/coxph.R R/cpo.R R/create.data.file.R R/cut.R R/cygwin.R R/debug.graph.R R/dev.new.R R/display.matrix.R R/doc.R R/expand.dataframe.R R/f.R R/fgn.R R/finn.R R/fmesher-io.R R/fmesher.R R/graph.convert.R R/graph.matrix.R R/group.R R/hyper.R R/hyperpar.R R/idx.R R/inla.R R/inlaEnv.R R/interpret.formula.R R/lattice2node.R R/lincomb.R R/link-functions.R R/list-models.R R/load.R
R/make-man-pages
R/make-man-pages.timestamp
R/marginal.R R/mdata.R R/mesh.R R/model-wrapper.R R/models-generate.R R/models.R R/obsolete.R R/options.R R/os.R R/pc-ar.R R/pc-bym.R R/pc-cor0.R R/pc-cor1.R R/pc-cormat.R R/pc-gamma.R R/pc-gammacount.R R/pc-multvar.R R/pc-prec.R R/pc-rho0.R R/pc-rho1.R R/pc-t.R R/plot.R R/posterior.sample.R R/print.R R/q.R R/qinv.R R/qreordering.R R/qsample.R R/qsolve.R R/quantile-regression.R R/read.graph.R R/remote.R R/reorderings.R R/rerun.R R/residuals.R R/rgeneric.R R/sampler.R R/sandbox.R R/scale.model.R R/sections.R R/sensitivity.R R/set.default.arguments.R R/sm.R R/spde.common.R R/spde1.R R/spde2.R R/spde3.R R/spmesh.R R/startup.R R/summary.R R/surv.R R/upgrade.R R/utils.R R/version.R
data/BivMetaAnalysis.rda
data/Cancer.rda
data/Drivers.rda
data/Epil.rda
data/Germany.rda
data/Kidney.rda
data/Leuk.rda
data/Munich.rda
data/Oral.rda
data/PRborder.rda
data/PRprec.rda
data/SPDEtoy.rda
data/Salm.rda
data/Scotland.rda
data/Seeds.rda
data/Surg.rda
data/SurvSim.rda
data/Tokyo.rda
data/Zambia.rda
demo/00Index
demo/Bym.R demo/Epil.R demo/Graph.R demo/Leuk.R demo/LeukPCprior.R demo/SPDEhowto.R demo/Tokyo-compare.R demo/Tokyo.R demo/mesh2d.R demo/mesh2d_run_me.R demo/rgeneric.R
inst/CITATION
inst/bin/linux/32bit/fmesher
inst/bin/linux/32bit/fmesher.run
inst/bin/linux/32bit/inla
inst/bin/linux/32bit/inla.run
inst/bin/linux/32bit/libX11.so.6
inst/bin/linux/32bit/libXau.so.6
inst/bin/linux/32bit/libXdmcp.so.6
inst/bin/linux/32bit/libc.so.6
inst/bin/linux/32bit/libdl.so.2
inst/bin/linux/32bit/libgcc_s.so.1
inst/bin/linux/32bit/libgfortran.so.3
inst/bin/linux/32bit/libgomp.so.1
inst/bin/linux/32bit/libgsl.so.19
inst/bin/linux/32bit/libgslcblas.so.0
inst/bin/linux/32bit/libm.so.6
inst/bin/linux/32bit/libpthread.so.0
inst/bin/linux/32bit/libquadmath.so.0
inst/bin/linux/32bit/libstdc++.so.6
inst/bin/linux/32bit/libxcb.so.1
inst/bin/linux/64bit/first/dummy
inst/bin/linux/64bit/fmesher
inst/bin/linux/64bit/fmesher.run
inst/bin/linux/64bit/fmesher.static
inst/bin/linux/64bit/inla
inst/bin/linux/64bit/inla.run
inst/bin/linux/64bit/inla.static
inst/bin/linux/64bit/libR.so
inst/bin/linux/64bit/libRblas.so
inst/bin/linux/64bit/libX11.so.6
inst/bin/linux/64bit/libXau.so.6
inst/bin/linux/64bit/libXdmcp.so.6
inst/bin/linux/64bit/libblas.so.3
inst/bin/linux/64bit/libbz2.so.1
inst/bin/linux/64bit/libbz2.so.1.0
inst/bin/linux/64bit/libc.so.6
inst/bin/linux/64bit/libdl.so.2
inst/bin/linux/64bit/libgcc_s.so.1
inst/bin/linux/64bit/libgfortran.so.3
inst/bin/linux/64bit/libgomp.so.1
inst/bin/linux/64bit/libgsl.so.19
inst/bin/linux/64bit/libgslcblas.so.0
inst/bin/linux/64bit/libicudata.so.50
inst/bin/linux/64bit/libicui18n.so.50
inst/bin/linux/64bit/libicuuc.so.50
inst/bin/linux/64bit/liblzma.so.5
inst/bin/linux/64bit/libm.so.6
inst/bin/linux/64bit/libpcre.so.1
inst/bin/linux/64bit/libpcre.so.3
inst/bin/linux/64bit/libpthread.so.0
inst/bin/linux/64bit/libquadmath.so.0
inst/bin/linux/64bit/libreadline.so.6
inst/bin/linux/64bit/librt.so.1
inst/bin/linux/64bit/libstdc++.so.6
inst/bin/linux/64bit/libtinfo.so.5
inst/bin/linux/64bit/libtre.so.5
inst/bin/linux/64bit/libxcb.so.1
inst/bin/linux/64bit/libz.so.1
inst/bin/mac/32bit/fmesher
inst/bin/mac/32bit/fmesher.run
inst/bin/mac/32bit/inla
inst/bin/mac/32bit/inla.run
inst/bin/mac/32bit/libX11.6.dylib
inst/bin/mac/32bit/libXau.6.dylib
inst/bin/mac/32bit/libXdmcp.6.dylib
inst/bin/mac/32bit/libgcc_s.1.dylib
inst/bin/mac/32bit/libgcc_s_x86_64.1.dylib
inst/bin/mac/32bit/libgfortran.3.dylib
inst/bin/mac/32bit/libgomp.1.dylib
inst/bin/mac/32bit/libquadmath.0.dylib
inst/bin/mac/32bit/libstdc++.6.dylib
inst/bin/mac/32bit/libxcb.1.dylib
inst/bin/mac/64bit/fmesher
inst/bin/mac/64bit/fmesher.run
inst/bin/mac/64bit/inla
inst/bin/mac/64bit/inla.run
inst/bin/mac/64bit/libR.dylib
inst/bin/mac/64bit/libRblas.dylib
inst/bin/mac/64bit/libX11.6.dylib
inst/bin/mac/64bit/libXau.6.dylib
inst/bin/mac/64bit/libXdmcp.6.dylib
inst/bin/mac/64bit/libgcc_s.1.dylib
inst/bin/mac/64bit/libgcc_s_x86_64.1.dylib
inst/bin/mac/64bit/libgfortran.3.dylib
inst/bin/mac/64bit/libgomp.1.dylib
inst/bin/mac/64bit/libquadmath.0.dylib
inst/bin/mac/64bit/libreadline.5.2.dylib
inst/bin/mac/64bit/libstdc++.6.dylib
inst/bin/mac/64bit/libxcb.1.dylib
inst/bin/remote/dot.inlarc-example
inst/bin/remote/dot.inlarc-example-windows
inst/bin/remote/inla.q
inst/bin/remote/inla.q.cygwin
inst/bin/remote/inla.remote
inst/bin/remote/inla.remote.cygwin
inst/bin/remote/inla.submit
inst/bin/remote/inla.submit.cygwin
inst/bin/remote/ssh-copy-id
inst/bin/windows/32bit/R.dll
inst/bin/windows/32bit/Rblas.dll
inst/bin/windows/32bit/Rgraphapp.dll
inst/bin/windows/32bit/Riconv.dll
inst/bin/windows/32bit/Rlapack.dll
inst/bin/windows/32bit/dummy
inst/bin/windows/32bit/fmesher.exe
inst/bin/windows/32bit/inla.exe
inst/bin/windows/64bit/R.dll
inst/bin/windows/64bit/Rblas.dll
inst/bin/windows/64bit/Rgraphapp.dll
inst/bin/windows/64bit/Riconv.dll
inst/bin/windows/64bit/Rlapack.dll
inst/bin/windows/64bit/dummy
inst/bin/windows/64bit/fmesher.exe
inst/bin/windows/64bit/inla.exe
inst/demodata/Bym-map.R
inst/demodata/Bym.map
inst/demodata/Leuk-map.R
inst/demodata/Leuk.graph
inst/demodata/Leuk.map
inst/demodata/Leuk.names.regions
inst/demodata/ddr.graph
inst/demodata/germany.graph
inst/demodata/munich.graph
inst/demodata/scotland.graph
inst/demodata/zambia.graph
inst/doc/TRD20160926weather.RData
inst/doc/latent/ar.pdf inst/doc/latent/ar1.pdf inst/doc/latent/besag.pdf inst/doc/latent/besag2.pdf inst/doc/latent/besagproper-OLD.pdf inst/doc/latent/besagproper.pdf inst/doc/latent/besagproper2.pdf inst/doc/latent/bym.pdf inst/doc/latent/bym2.pdf inst/doc/latent/clinear.pdf inst/doc/latent/crw2.pdf inst/doc/latent/fgn.pdf inst/doc/latent/generic0.pdf inst/doc/latent/generic1.pdf inst/doc/latent/generic2.pdf inst/doc/latent/generic3.pdf inst/doc/latent/iid.pdf inst/doc/latent/iid123d.pdf inst/doc/latent/indep.pdf inst/doc/latent/linear.pdf inst/doc/latent/log1exp.pdf inst/doc/latent/logdist.pdf inst/doc/latent/matern2d.pdf inst/doc/latent/meb.pdf inst/doc/latent/mec-details.pdf inst/doc/latent/mec.pdf inst/doc/latent/ou.pdf inst/doc/latent/rgeneric.pdf inst/doc/latent/rw1.pdf inst/doc/latent/rw2.pdf inst/doc/latent/rw2d-model.pdf inst/doc/latent/rw2d.pdf inst/doc/latent/rw2diid.pdf inst/doc/latent/rw2dx3-model.pdf inst/doc/latent/seasonal.pdf inst/doc/latent/sigm.pdf inst/doc/latent/slm.pdf inst/doc/latent/wishard.pdf inst/doc/latent/z.pdf inst/doc/likelihood/beta.pdf inst/doc/likelihood/betabinomial.pdf inst/doc/likelihood/binomial.pdf inst/doc/likelihood/cbinomial.pdf inst/doc/likelihood/cenpoisson.pdf inst/doc/likelihood/circular-normal.pdf inst/doc/likelihood/coxph.pdf inst/doc/likelihood/exponential.pdf inst/doc/likelihood/gamma.pdf inst/doc/likelihood/gammacount.pdf inst/doc/likelihood/gaussian.pdf inst/doc/likelihood/genPareto.pdf inst/doc/likelihood/gev.pdf inst/doc/likelihood/gpoisson.pdf inst/doc/likelihood/iidexp.pdf inst/doc/likelihood/iidgamma.pdf inst/doc/likelihood/iidlogitbeta.pdf inst/doc/likelihood/kumar.pdf inst/doc/likelihood/laplace.pdf inst/doc/likelihood/likelihood-example.pdf inst/doc/likelihood/logistic.pdf inst/doc/likelihood/loglogistic.pdf inst/doc/likelihood/lognormal.pdf inst/doc/likelihood/nbinomial.pdf inst/doc/likelihood/nmix.pdf inst/doc/likelihood/nmixnb.pdf inst/doc/likelihood/poisson.pdf inst/doc/likelihood/qkumar.pdf inst/doc/likelihood/qloglogistic.pdf inst/doc/likelihood/qpoisson.pdf inst/doc/likelihood/simplex.pdf inst/doc/likelihood/sn.pdf inst/doc/likelihood/sn2.pdf inst/doc/likelihood/stochvolgaussian.pdf inst/doc/likelihood/stochvolnig.pdf inst/doc/likelihood/stochvolt.pdf inst/doc/likelihood/student-t.pdf inst/doc/likelihood/tstrata.pdf inst/doc/likelihood/weibull.pdf inst/doc/likelihood/weibullcure-background.pdf inst/doc/likelihood/weibullcure.pdf inst/doc/likelihood/wrapped-cauchy.pdf inst/doc/likelihood/zeroinflated.pdf inst/doc/likelihood/zeroinflatedbetabinomial2.pdf inst/doc/link/logoffset.pdf inst/doc/manual/INLA.pdf inst/doc/prior/betacorrelation.pdf inst/doc/prior/expression.pdf inst/doc/prior/gaussian.pdf inst/doc/prior/logitbeta.pdf inst/doc/prior/pc.cor0.pdf inst/doc/prior/pc.cor1.pdf inst/doc/prior/pc.dof.pdf
inst/doc/prior/pc.fgnh
inst/doc/prior/pc.gamma.pdf inst/doc/prior/pc.gammacount.pdf inst/doc/prior/pc.prec.pdf inst/doc/prior/prior-flat.pdf inst/doc/prior/prior-loggamma.pdf inst/doc/prior/prior-logtnorm.pdf inst/doc/prior/table.pdf inst/doc/prior/various-flat.pdf inst/tests/run-all.R inst/tests/test-A.R inst/tests/test-ar.R inst/tests/test-argument-link.R inst/tests/test-besag2.R inst/tests/test-besagproper.R inst/tests/test-besagproper2.R inst/tests/test-beta.R inst/tests/test-betabinomial.R inst/tests/test-bym.R inst/tests/test-bym2.R inst/tests/test-cbinomial.R inst/tests/test-circular.R inst/tests/test-config.R inst/tests/test-control-mode.R inst/tests/test-copy.R inst/tests/test-coxph.R inst/tests/test-cpo-po-mlik.R inst/tests/test-dic.R inst/tests/test-expand-factor-strategy.R inst/tests/test-gamma.R inst/tests/test-generic.R inst/tests/test-poisson.R inst/tests/test-prior.R inst/tests/test-require.R man/BivMetaAnalysis.Rd man/Cancer.Rd man/Drivers.Rd man/Epil.Rd man/Germany.Rd man/INLA-package.Rd man/Kidney.Rd man/Leuk.Rd man/Munich.Rd man/Oral.Rd man/PRborder.Rd man/PRprec.Rd man/SPDEtoy.Rd man/Salm.Rd man/Scotland.Rd man/Seeds.Rd man/Surg.Rd man/SurvSim.Rd man/Tokyo.Rd man/Zambia.Rd man/ar.Rd man/as.inla.mesh.segment.Rd man/changelog.Rd man/collect.results.Rd man/compare.results.Rd man/contributed-1.Rd man/control.compute.Rd man/control.expert.Rd man/control.family.Rd man/control.fixed.Rd man/control.group.Rd man/control.hazard.Rd man/control.inla.Rd man/control.lincomb.Rd man/control.link.Rd man/control.mix.Rd man/control.mode.Rd man/control.predictor.Rd man/control.results.Rd man/control.update.Rd man/coxph.Rd man/cpo.Rd man/cut.Rd man/debug.graph.Rd man/dev.new.Rd man/doc.Rd man/extract.groups.Rd man/f.Rd man/fgn.Rd man/graph.convert.Rd man/graph.matrix.Rd man/group.Rd man/hyperpar.Rd man/idx.Rd man/inla.CRS.Rd man/inla.CRSargs.Rd man/inla.Rd man/inla.dBind.Rd man/inla.diameter.Rd man/inla.extract.el.Rd man/inla.fmesher.smorg.Rd man/inla.generate.colors.Rd man/inla.identical.CRS.Rd man/inla.matern.cov.Rd man/inla.mesh.1d.A.Rd man/inla.mesh.1d.Rd man/inla.mesh.2d.Rd man/inla.mesh.basis.Rd man/inla.mesh.boundary.Rd man/inla.mesh.create.Rd man/inla.mesh.create.helper.Rd man/inla.mesh.deriv.Rd man/inla.mesh.fem.Rd man/inla.mesh.lattice.Rd man/inla.mesh.map.Rd man/inla.mesh.project.Rd man/inla.mesh.query.Rd man/inla.mesh.segment.Rd man/inla.nonconvex.hull.Rd man/inla.row.kron.Rd man/inla.sens.Rd man/inla.simplify.curve.Rd man/inla.spTransform.Rd man/inla.spde.make.A.Rd man/inla.spde.make.block.A.Rd man/inla.spde.make.index.Rd man/inla.spde.models.Rd man/inla.spde.precision.Rd man/inla.spde.result.Rd man/inla.spde.sample.Rd man/inla.spde1.create.Rd man/inla.spde2.generic.Rd man/inla.spde2.matern.Rd man/inla.spde2.matern.sd.basis.Rd man/inla.spde2.pcmatern.Rd man/inla.stack.Rd man/lattice2node.Rd man/lincomb.Rd man/lines.inla.mesh.segment.Rd man/link-functions.Rd man/list-models.Rd man/load.Rd man/marginal.Rd man/mdata.Rd man/models.Rd man/nwEngland.Rd man/options.Rd man/param2.matern.orig.Rd man/pc-ar.Rd man/pc-cor0.Rd man/pc-cor1.Rd man/pc-cormat.Rd man/pc-gamma.Rd man/pc-gammacount.Rd man/pc-multvar.Rd man/pc-prec.Rd man/pc-rho0.Rd man/pc-rho1.Rd man/pc-t.Rd man/plot.Rd man/plot.inla.CRS.Rd man/plot.inla.mesh.Rd man/plot.inla.trimesh.Rd man/posterior.sample.Rd man/print.Rd man/q.Rd man/qinv.Rd man/qreordering.Rd man/qsample.Rd man/qsolve.Rd man/read.graph.Rd man/remote.Rd man/reorderings.Rd man/rerun.Rd man/residuals.Rd man/rgeneric.Rd man/sampler.Rd man/scale.model.Rd man/sensitivity.Rd man/sm.Rd man/summary.Rd man/summary.inla.mesh.Rd man/surv.Rd man/upgrade.Rd man/version.Rd
vignettes/Makefile
vignettes/Old/SPDE1d.Rmd vignettes/Old/SPDEhowto.Rmd vignettes/SPDE1d.Rmd
vignettes/SPDE1d.Rnw
vignettes/SPDE1d.html
vignettes/SPDE1d.pdf vignettes/SPDEhowto.Rmd
vignettes/SPDEhowto.Rnw
vignettes/SPDEhowto.html
vignettes/SPDEhowto.pdf
vignettes/TRD20160926weather.RData
vignettes/int-design.Rmd vignettes/isbaspde.R vignettes/isbaspde.pdf
vignettes/scale-model.Rnw
vignettes/scale-model.pdf
vignettes/shs.bib
vignettes/spde-tutorial.bib
vignettes/spde-tutorial.pdf
INBO-BMK/INLA documentation built on July 28, 2017, 10:28 a.m.