Files in InfOmics/LErNet
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
.Rbuildignore
.gitignore
DESCRIPTION
LErNet.Rproj
LICENSE
NAMESPACE
R/LErNet.R
R/LErNet_011.R
R/arenaidb.R
R/support.R
README.html
README.md
inst/extdata/41598_2018_30359_MOESM2_ESM.csv
inst/extdata/41598_2018_30359_MOESM3_ESM.csv
inst/extdata/558557_Yang/Table4.csv
inst/extdata/arenaidb/alias.tsv.gz
inst/extdata/arenaidb/diseases.tsv.gz
inst/extdata/arenaidb/gene.aliases.tsv.gz
inst/extdata/arenaidb/interactions.tsv.gz
inst/extdata/arenaidb/ncRNA.tsv.gz
inst/extdata/arenaidb/proteins.aliases.tsv.gz
inst/extdata/gastric_cancer/gene_result.txt
inst/extdata/gencode.v34.annotation.gtf.gz
inst/extdata/gencode.vM20.chr_patch_hapl_scaff.annotation.gtf.gz
inst/extdata/homo_hantaan/de_remaked/lncnovel_filtered.csv
inst/extdata/homo_hantaan/de_remaked/lncrna_known.csv
inst/extdata/homo_hantaan/de_remaked/lncrna_novel.csv
inst/extdata/homo_hantaan/de_remaked/pcgenes.csv
inst/extdata/homo_hantaan/original/gse133751_lncrna-exp.txt
inst/extdata/homo_hantaan/original/gse133751_mrna-exp.txt
inst/extdata/homo_hantaan/original/gse133751_new_lncrna-exp.txt
inst/extdata/mart_export.csv
inst/extdata/mouse_rabies_virus/10090.protein.links.v10.txt.gz
inst/extdata/mouse_rabies_virus/10090.protein.links.v11.0.txt.gz
inst/extdata/mouse_rabies_virus/41598_2018_30359_MOESM2_ESM.csv
inst/extdata/mouse_rabies_virus/41598_2018_30359_MOESM3_ESM.csv
inst/extdata/mouse_rabies_virus/gencode.vM20.chr_patch_hapl_scaff.annotation.gtf.gz
man/enps_to_entrez.Rd
man/enrich.Rd
man/enrich_001.Rd
man/expand_seeds.Rd
man/expand_seeds_bc_011.Rd
man/get_arenaidb_diseases.Rd
man/get_arenaidb_gene_aliases.Rd
man/get_arenaidb_interactions.Rd
man/get_arenaidb_ncrnas.Rd
man/get_arenaidb_ncrnas_aliases.Rd
man/get_arenaidb_protein_aliases.Rd
man/get_connected_components.Rd
man/get_genomic_context.Rd
man/get_stringdb.Rd
man/get_stringdb_bc_011.Rd
man/load_gtf.Rd
man/search_in_arenaidb.Rd
man/visualize.Rd
man/visualize_011.Rd
