load_gtf: Creation of a coordinates data.frame from a GTF file
In InfOmics/LErNet: LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
Description
Usage
Arguments
Value
Examples
Description
Creates the coordinates data.frame by reading the data from a GTF file
having 9 columns (whihc is the typical format of GTF files from GENCODE).
Usage
1
load_gtf(gtf_file)
Arguments
gtf_file
the path tot he GTF file
Value
a data.frame with columns: id type seqname start end
Examples
1
2
gtf_file <- system.file("extdata", "gencode.v34.annotation.gtf.gz", package = "LErNet")
complete_positions <- LErNet::load_gtf(gtf_file)
InfOmics/LErNet documentation built on April 10, 2021, 4:49 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Creates the coordinates data.frame by reading the data from a GTF file having 9 columns (whihc is the typical format of GTF files from GENCODE).
Usage
1 | load_gtf(gtf_file)
|
Arguments
gtf_file |
the path tot he GTF file |
Value
a data.frame with columns: id type seqname start end
Examples
1 2 | gtf_file <- system.file("extdata", "gencode.v34.annotation.gtf.gz", package = "LErNet")
complete_positions <- LErNet::load_gtf(gtf_file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.