Man pages for InfOmics/LErNet
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
| enps_to_entrez | Mapping from Ensembl to Entrez |
| enrich | Functional enrichment |
| enrich_001 | Functional enrichment |
| expand_seeds | Expansion of the seed network |
| expand_seeds_bc_011 | Expansion of the seed network |
| get_arenaidb_diseases | Retriving the disease's section of Arena-idb |
| get_arenaidb_gene_aliases | Retriving the alias of genes from Arena-idb |
| get_arenaidb_interactions | Retriving the interactions involving lncrnas |
| get_arenaidb_ncrnas | Retriving the lncrna's section of Arena-idb |
| get_arenaidb_ncrnas_aliases | Retriving the aliases of lncrnas from Arena-idb |
| get_arenaidb_protein_aliases | Retriving the aliases of proteins from Arena-idb |
| get_connected_components | Extraction of the connected components of the network |
| get_genomic_context | Extraction of the genomic context |
| get_stringdb | Retrieving of information from the STRING database |
| get_stringdb_bc_011 | Retrieving of information from the STRING database |
| load_gtf | Creation of a coordinates data.frame from a GTF file |
| search_in_arenaidb | Retriving the informations about the aliases and the... |
| visualize | Visualization of the expanded network |
| visualize_011 | Visualization of the expanded network |
