Files in InnovationValueInitiative/IVI-NSCLC
The IVI-NSCLC model

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/adverse-events.R R/costmods.R R/data.R R/globals.R R/ivi-nsclc.R R/mcda.R R/model-setup.R R/productivity-costs.R R/transmod.R R/txseq.R R/utilmod.R R/utils.R R/value_of_hope.R README.md data-raw/Make-data.R data-raw/README.md data-raw/adverse_events.R

data-raw/ae-nma-data/data_alt_increase.csv

data-raw/ae-nma-data/data_ast_increase.csv

data-raw/ae-nma-data/data_diarrhea.csv

data-raw/ae-nma-data/data_dry_skin.csv

data-raw/ae-nma-data/data_eye_problems.csv

data-raw/ae-nma-data/data_paronychia.csv

data-raw/ae-nma-data/data_pneumonitis.csv

data-raw/ae-nma-data/data_pruritus.csv

data-raw/ae-nma-data/data_rash.csv

data-raw/ae-nma-data/data_stomatitis.csv

data-raw/ae-nma/README.md

data-raw/ae-nma/alt.csv

data-raw/ae-nma/ast.csv

data-raw/ae-nma/diarrhea.csv

data-raw/ae-nma/dry_skin.csv

data-raw/ae-nma/eye_problems.csv

data-raw/ae-nma/paronychia.csv

data-raw/ae-nma/pneumonitis.csv

data-raw/ae-nma/pruritus.csv

data-raw/ae-nma/rash.csv

data-raw/ae-nma/stomatitis.csv

data-raw/ae-nma/tx_lookup.csv

data-raw/age-distribution.csv

data-raw/age.R

data-raw/costs_ae.xlsx

data-raw/costs_inpt.xlsx

data-raw/costs_op.xlsx

data-raw/figs/age-barplot.pdf data-raw/figs/age-density.pdf data-raw/figs/os-1L-check.pdf data-raw/figs/os-1L-gef-check.pdf data-raw/figs/os-2L-pbdc-check.pdf data-raw/figs/os-2L-t790m-osi-check.pdf data-raw/figs/pfs-1L-check.pdf data-raw/figs/pfs-1L-gef-check.pdf data-raw/figs/pfs-2L-pbdc-check.pdf data-raw/figs/pfs-2L-t790m-osi-check.pdf data-raw/func.R data-raw/mcda-defaults.R

data-raw/mcda-defaults.xlsx

data-raw/medical-cpi.xlsx

data-raw/mstate-nma-data/egfr-1l-all-comers-both-pfs-os-gef-as-ref-tx/data_for_analysis_events.csv

data-raw/mstate-nma-data/egfr-1l-all-comers-both-pfs-os-gef-as-ref-tx/data_for_analysis_study.csv

data-raw/mstate-nma-data/egfr-1l-all-comers-both-pfs-os-gef-as-ref-tx/data_for_analysis_tx.csv

data-raw/mstate-nma-data/egfr-1l-gef-all-comers-both-pfs-os/data_for_analysis_events.csv

data-raw/mstate-nma-data/egfr-2l-osi-t790/data_for_analysis_events.csv

data-raw/mstate-nma-data/egfr-2l-pbdc-all-comers/data_for_analysis_events.csv

data-raw/mstate-nma/README.md

data-raw/mstate-nma/ma-1L-fe-gef-fp-p0.csv

data-raw/mstate-nma/ma-1L-fe-gef-fp-p00.csv

data-raw/mstate-nma/ma-1L-fe-gef-fp-p01.csv

data-raw/mstate-nma/ma-1L-fe-gef-fp-p1.csv

data-raw/mstate-nma/ma-2L-fe-pbdc-fp-p0.csv

data-raw/mstate-nma/ma-2L-fe-pbdc-fp-p00.csv

data-raw/mstate-nma/ma-2L-fe-pbdc-fp-p01.csv

data-raw/mstate-nma/ma-2L-fe-pbdc-fp-p1.csv

data-raw/mstate-nma/ma-2L-fe-t790m-osi-fp-p0.csv

data-raw/mstate-nma/ma-2L-fe-t790m-osi-fp-p00.csv

data-raw/mstate-nma/ma-2L-fe-t790m-osi-fp-p01.csv

data-raw/mstate-nma/ma-2L-fe-t790m-osi-fp-p1.csv

data-raw/mstate-nma/nma-1L-fe-fp-p0.csv

data-raw/mstate-nma/nma-1L-fe-fp-p00.csv

data-raw/mstate-nma/nma-1L-fe-fp-p01.csv

data-raw/mstate-nma/nma-1L-fe-fp-p1.csv

data-raw/mstate-nma/params-lookup-1L.xlsx

data-raw/mstate-nma/params-lookup-2L-pbdc.xlsx

data-raw/mstate-nma/params-lookup-2L-t790m-osi.xlsx

data-raw/mstate-nma/tx-lookup-1L.csv

data-raw/mstate-nma/tx-lookup-2L.csv

data-raw/params_ae_nma.R data-raw/params_costs_ae.R data-raw/params_costs_inpt.R data-raw/params_costs_op.R data-raw/params_costs_prod.R data-raw/params_costs_tx.R data-raw/params_mstate_nma.R data-raw/params_utility.R

data-raw/productivity-costs.xlsx

data-raw/treatment-costs.xlsx

data-raw/treatments.R

data-raw/treatments.csv

data-raw/utility.xlsx

data/adverse_events.rda

data/age_dist.rda

data/mcda_defaults.rda

data/mstate_ma_coef.rda

data/mstate_nma_coef.rda

data/mstate_nma_hazard.rda

data/mstate_nma_hr.rda

data/mstate_nma_os.rda

data/mstate_nma_pfs.rda

data/params_ae_nma.rda

data/params_costs_ae.rda

data/params_costs_inpt.rda

data/params_costs_op.rda

data/params_costs_prod.rda

data/params_costs_tx.rda

data/params_mstate_nma.rda

data/params_utility.rda

data/treatments.rda

docs/articles/index.html

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docs/articles/source-data.html

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docs/articles/tutorial.html

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docs/articles/tutorial_files/figure-html/plot_prod_costs_cat-1.png

docs/articles/tutorial_files/figure-html/stateprobs-1.png

docs/articles/tutorial_files/figure-html/voh-plot-nmb-1.png

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docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/model-doc/figs/RCT-network-1L.png

docs/model-doc/figs/README

docs/model-doc/figs/ae-probs.pdf

docs/model-doc/figs/dist-patchar-plots/age 1L.jpg

docs/model-doc/figs/dist-patchar-plots/current former smoker 1L.jpg

docs/model-doc/figs/dist-patchar-plots/female 1L.jpg

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docs/model-doc/figs/dist-patchar-plots/prop stage IIIb 1L.jpg

docs/model-doc/figs/dist-patchar-plots/prop stage IV 1L.jpg

docs/model-doc/figs/dist-patchar-plots/prop white 1L.jpg

docs/model-doc/figs/flow diagram SLR.png

docs/model-doc/figs/km-plots/.DS_Store

docs/model-doc/figs/km-plots/ARCHER_1050 Mok 2018 OS Kaplan Meier.png

docs/model-doc/figs/km-plots/ARCHER_1050 Wu 2017 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/AURA2 Mitsudomi 2017 OS (EGFR+_T790+) Kaplan Meier.png

docs/model-doc/figs/km-plots/AURA3 Mok 2017 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/AURA3 Mok 2017 PFS (EGFR+_T790M+) Kaplan Meier.png

docs/model-doc/figs/km-plots/AURA_EXT Mitsudomi 2017 OS (EGFR+_T790+) Kaplan Meier.png

docs/model-doc/figs/km-plots/ENSURE Wu 2015 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/ENSURE Wu 2015 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/EURTAC Costa 2014 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/EURTAC De_Marinis 2015 PFS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/FLAURA Soria 2018 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/FLAURA Soria 2018 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/FirstSIGNAL Han 2012 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/FirstSIGNAL Han 2012 PFS (EGFR+_IA) Kaplan Meier.png

docs/model-doc/figs/km-plots/Han_2017 Han 2017 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/Han_2017 Han 2017 PFS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/IMPRESS Mok 2017 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/IMPRESS Soria 2015 PFS (EGFR+_IA) Kaplan Meier.png

docs/model-doc/figs/km-plots/IPASS Fukuoka 2011 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/IPASS Mok 2009 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/LUXlung_3 Sequist 2013 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/LUXlung_3 Yang 2015 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/LUXlung_6 Wu 2014 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/LUXlung_6 Yang 2015 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/LUXlung_7 Paz_Ares 2017 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/LUXlung_7 Paz_Ares 2017 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/NEJ002 Inoue 2013 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/NEJ002 Maemondo 2010 PFS (EGFR+_IRC) Kaplan Meier.png

docs/model-doc/figs/km-plots/OPTIMAL Zhou 2011 PFS (EGFR+_IA) Kaplan Meier.png

docs/model-doc/figs/km-plots/OPTIMAL Zhou 2015 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/WJTOG3405 Mitsudomi 2010 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/WJTOG3405 Mitsudomi 2010 PFS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/Yang_2014 Yang 2014 PFS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/km-plots/Yang_2014 Yang 2016 OS (EGFR+) Kaplan Meier.png

docs/model-doc/figs/medsurv-os.pdf docs/model-doc/figs/medsurv-pfs.pdf

docs/model-doc/figs/model-structure-3-states.png

docs/model-doc/figs/model-structure-4-states.png

docs/model-doc/figs/multistate-nma.png

docs/model-doc/figs/pfs-2L.pdf docs/model-doc/figs/surv-1L-fp-00.pdf docs/model-doc/figs/surv-1L-fp-01.pdf docs/model-doc/figs/surv-1L-gompertz.pdf docs/model-doc/figs/surv-1L-weibull.pdf docs/model-doc/figs/surv-1L.pdf docs/model-doc/figs/surv-2L-pbdc.pdf docs/model-doc/figs/surv-2L-t790m-osi.pdf

docs/model-doc/figs/treatment-strategies.png

docs/model-doc/model-doc.R docs/model-doc/model-doc.pdf

docs/model-doc/model-doc.tex

docs/model-doc/output/dic.csv

docs/model-doc/output/txtstats.txt

docs/model-doc/references.bib

docs/model-doc/slr/slr-cost-estimates.xlsx

docs/model-doc/slr/slr-treatment-effects.xlsx

docs/model-doc/slr/slr-utility-estimates.xlsx

docs/model-doc/tables-raw/patchars.xlsx

docs/model-doc/tables-raw/studychars.xlsx

docs/model-doc/tables-raw/treatchars.xlsx

docs/model-doc/tables-raw/trials.csv

docs/model-doc/tables/README

docs/model-doc/tables/acq_costs.txt

docs/model-doc/tables/admin_costs.txt

docs/model-doc/tables/ae-disutility.txt

docs/model-doc/tables/ae_costs.txt

docs/model-doc/tables/dic-1L-ma-gef.txt

docs/model-doc/tables/dic-1L-nma.txt

docs/model-doc/tables/dic-2L-ma.txt

docs/model-doc/tables/dosage.txt

docs/model-doc/tables/inpt_costs.txt

docs/model-doc/tables/mstate-ma-1L-coef.txt

docs/model-doc/tables/mstate-ma-2L-pbdc-coef.txt

docs/model-doc/tables/mstate-ma-2L-t790m-osi-coef.txt

docs/model-doc/tables/mstate-nma-1L-coef.txt

docs/model-doc/tables/op_costs.txt

docs/model-doc/tables/patchar-1-1L.txt

docs/model-doc/tables/patchar-1-2L.txt

docs/model-doc/tables/patchar-2-1L.txt

docs/model-doc/tables/patchar-2-2L.txt

docs/model-doc/tables/patchar-3-1L.txt

docs/model-doc/tables/patchar-3-2L.txt

docs/model-doc/tables/state-utility.txt

docs/model-doc/tables/studychar-1-1L.txt

docs/model-doc/tables/studychar-1-2L.txt

docs/model-doc/tables/studychar-2-1L.txt

docs/model-doc/tables/studychar-2-2L.txt

docs/model-doc/tables/studychar-3-1L.txt

docs/model-doc/tables/studychar-3-2L.txt

docs/model-doc/tables/texput.log

docs/model-doc/tables/treatchar-1-1L.txt

docs/model-doc/tables/treatchar-1-2L.txt

docs/model-doc/tables/trials.txt

docs/model-doc/tables/wages_female.txt

docs/model-doc/tables/wages_male.txt

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/add_prod_costs.html

docs/reference/adverse_events.html

docs/reference/ae_probs.html

docs/reference/age_dist.html

docs/reference/annualized_tx_costs.html

docs/reference/check.html

docs/reference/create_costmods.html

docs/reference/create_patients.html

docs/reference/create_states.html

docs/reference/create_trans_mat.html

docs/reference/create_transmod.html

docs/reference/create_transmod_data.html

docs/reference/create_transmod_params.html

docs/reference/create_utilmod.html

docs/reference/index.html

docs/reference/iviNSCLC.html

docs/reference/lpvf.html

docs/reference/lpvf_plot_data.html

docs/reference/mcda.html

docs/reference/mcda_defaults.html

docs/reference/model_structure.html

docs/reference/mstate_ma_coef.html

docs/reference/mstate_nma_coef.html

docs/reference/mstate_nma_hazard.html

docs/reference/mstate_nma_hr.html

docs/reference/mstate_nma_surv.html

docs/reference/params_ae_nma.html

docs/reference/params_costs_ae.html

docs/reference/params_costs_inpt.html

docs/reference/params_costs_op.html

docs/reference/params_costs_prod.html

docs/reference/params_costs_tx.html

docs/reference/params_mstate_nma.html

docs/reference/params_utility.html

docs/reference/performance_matrix.html

docs/reference/pkg_env.html

docs/reference/sim_prod_costs.html

docs/reference/summarize_outcomes.html

docs/reference/tidy.ae_probs.html

docs/reference/tidy.html

docs/reference/treatments.html

docs/reference/tx_1L.html

docs/reference/tx_2L.html

docs/reference/tx_2LP.html

docs/reference/txattr_performance.html

docs/reference/txseq.html

docs/reference/txseq_list.html

docs/reference/value_of_hope.html

man/add_prod_costs.Rd man/adverse_events.Rd man/ae_probs.Rd man/age_dist.Rd man/annualized_tx_costs.Rd man/check.Rd man/create_costmods.Rd man/create_patients.Rd man/create_states.Rd man/create_trans_mat.Rd man/create_transmod.Rd man/create_transmod_data.Rd man/create_transmod_params.Rd man/create_utilmod.Rd man/iviNSCLC.Rd man/lpvf.Rd man/lpvf_plot_data.Rd man/mcda.Rd man/mcda_defaults.Rd man/model_structure.Rd man/mstate_ma_coef.Rd man/mstate_nma_coef.Rd man/mstate_nma_hazard.Rd man/mstate_nma_hr.Rd man/mstate_nma_surv.Rd man/params_ae_nma.Rd man/params_costs_ae.Rd man/params_costs_inpt.Rd man/params_costs_op.Rd man/params_costs_prod.Rd man/params_costs_tx.Rd man/params_mstate_nma.Rd man/params_utility.Rd man/performance_matrix.Rd man/pkg_env.Rd man/sim_prod_costs.Rd man/summarize_outcomes.Rd man/tidy.Rd man/tidy.ae_probs.Rd man/treatments.Rd man/tx_1L.Rd man/tx_2L.Rd man/tx_2LP.Rd man/txattr_performance.Rd man/txseq.Rd man/txseq_list.Rd man/value_of_hope.Rd

pkgdown/_pkgdown.yml

tests/testthat.R tests/testthat/helpers.R tests/testthat/test-adverse-event.R tests/testthat/test-costmods.R tests/testthat/test-mcda.R tests/testthat/test-model-setup.R tests/testthat/test-productivity-costs.R tests/testthat/test-transmod.R tests/testthat/test-txseq.R tests/testthat/test-utilmod.R tests/testthat/test-utils.R tests/testthat/test-value_of_hope.R

vignettes/modstruct3_1L.png

vignettes/modstruct4_1L.png

vignettes/source-data.Rmd

vignettes/treatment-strategies.png

vignettes/tutorial.Rmd

InnovationValueInitiative/IVI-NSCLC documentation built on July 25, 2019, 8:03 p.m.

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InnovationValueInitiative/IVI-NSCLC
The IVI-NSCLC model

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The IVI-NSCLC model

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InnovationValueInitiative/IVI-NSCLC The IVI-NSCLC model

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InnovationValueInitiative/IVI-NSCLC
The IVI-NSCLC model

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The IVI-NSCLC model