DrugSyn-class: DrugSyn class

In InstitutCurie/synerdrug: Analysis of drug combinations

Description

S4 class to store drug combination data

Usage

## S4 method for signature 'DrugSyn'
doses(object)

## S4 replacement method for signature 'DrugSyn,list'
doses(object) <- value

## S4 method for signature 'DrugSyn'
expData(object)

## S4 replacement method for signature 'DrugSyn,data.frame'
expData(object) <- value

## S4 method for signature 'DrugSyn'
respInd(object)

## S4 replacement method for signature 'DrugSyn,list'
respInd(object) <- value

## S4 method for signature 'DrugSyn'
drugNames(object)

## S4 replacement method for signature 'DrugSyn,vector'
drugNames(object) <- value

## S4 method for signature 'DrugSyn'
content(object)

## S4 replacement method for signature 'DrugSyn,character'
content(object) <- value

## S4 method for signature 'DrugSyn'
plot(x, type = c("heatmap", "parallel", "ind", "surface"),
  ...)

Arguments

object	a DrugSyn
value	replacement value
x	DrugSyn object
type	type of plot
...	arguments given to plots functions

Methods (by generic)

• doses: get doses values

• doses<-: set doses values

• expData: extract experimental data

• expData<-: set experimental data

• respInd: extract individual responses

• respInd<-: set individual responses

• drugNames: extract drug names

• drugNames<-: set drug names

• content: get content type

• content<-: set content type

• plot: plot DrugSyn object

Slots

data

data.frame

doses

list

respInd

list

drugNames

vector

dataMean

data.frame

content

character

typeHill

numeric

range

character

Examples

data(exDrugSyn)
## heatmap
plot(exDrugSyn)
## surface
plot(exDrugSyn, type = "surface")
## parallel plot
plot(exDrugSyn, type = "parallel", ref = "drugA")
## individual response
plot(exDrugSyn, type = "ind", drug = "drugB")

InstitutCurie/synerdrug documentation built on May 8, 2019, 10:56 a.m.