count_oligo: Count oligonucleotide frequency
In J-Moravec/sighunt: Tool for horizontal transfer detection
Description
Usage
Arguments
Value
Description
Counts occurrence of one or more oligonucleotides in on or more sequences.
This is wraper around stringr function
str_count. Do to its limitations, you cannot search
multiple oligos in multiple sequences at once.
Usage
1
count_oligo(oligo, sequence)
Arguments
oligo
character (or character vector) of oligonucleotide.
sequence
character (or character vector) of DNA (or RNA)
sequence.
Value
vector of occurrence
J-Moravec/sighunt documentation built on May 7, 2019, 6:46 a.m.
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Description Usage Arguments Value
Description
Counts occurrence of one or more oligonucleotides in on or more sequences.
This is wraper around stringr function
str_count. Do to its limitations, you cannot search
multiple oligos in multiple sequences at once.
Usage
1 | count_oligo(oligo, sequence)
|
Arguments
oligo |
character (or character vector) of oligonucleotide. |
sequence |
character (or character vector) of DNA (or RNA) sequence. |
Value
vector of occurrence
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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