HoneyBADGER_retestIdentifiedCnvs: Calculate posterior probability of CNVs for regions...

In JEFworks/HoneyBADGER: HMM-integrated Bayesian approach for detecting CNV and LOH events using single-cell RNA-seq data

Description

Calculate posterior probability of CNVs for regions identified by the recursive HMM approach

Arguments

retestBoundGenes	Boolean of whether to retest using expression model
retestBoundSnps	Boolean of whether to retest using allele model
intersect	If true will intersect regions identified from allele and expression HMMs. Otherwise, will union
verbose	Verbosity
...	Additional parameters to pass to calcGexpCnvProb or calcAlleleCnvProb

JEFworks/HoneyBADGER documentation built on July 24, 2021, 3:01 p.m.