Files in JEFworks/badger
Bayesian approach for detecting copy number alterations from single cell RNA-seq data
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/calculate.R
R/combinedModel.R
R/data.R
R/expressionModel.R
R/hmm.R
R/pointsWithin.R
R/snpModel.R
README.md
badger.png
data/MM16.counts.rda
data/Normal.counts.rda
data/snpsHet_MM16BulkSample.rda
data/snpsHet_MM16ScSample.rda
inst/bug/combinedModel.bug
inst/bug/expressionModel.bug
inst/bug/snpModel.bug
license.txt
man/calcAlleleCnvProb.Rd
man/calcCombCnvProb.Rd
man/calcErrorRate.Rd
man/calcGexpCnvProb.Rd
man/clafProfile.Rd
man/geneFactors.Rd
man/getAlleleCount.Rd
man/getCoverage.Rd
man/insideCnvs.Rd
man/mvFit.Rd
man/normalizedExpression.Rd
man/plotExpHeatmap.Rd
man/pointsWithin.Rd
man/pos2GRanges.Rd
man/range2GRanges.Rd
sample_img.jpg
vignettes/sample_analysis.Rmd
