haplo_visual: The order of haplotype present in plot are start from high...

In JH-Zhou/HandyCNV: HandyCNV: An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH

Description

The order of haplotype present in plot are start from high frequency to low from top to bottom

Usage

haplo_visual(
  haplotype,
  filter_freq = 0,
  letter_size = 2,
  show_letter = TRUE,
  xlab_text = ""
)

Arguments

haplotype	a list of haplotype information that generate by get_haplotype function
filter_freq	used to filter haplotype by frequency, only the selected haplotype will present in plot
letter_size	integer number to adjust the letter size of GCTA etc
show_letter	assign "True" to present base pairs in plot, "False" to hide text, is useful on large plot
xlab_text	add additional text into X label, for example, plot haplotype for specific genes

Value

haplotype plot

JH-Zhou/HandyCNV documentation built on Dec. 18, 2021, 12:25 a.m.