prep_phased: Prepare the phased genotype into the standard format
In JH-Zhou/HandyCNV: HandyCNV: An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH
Description
Usage
Arguments
Value
View source: R/get_haplotype.R
Description
This function used to prepare phased genotype file to standard format in 'HandyCNV' to get haplotype for any interested genomic region,
The input file should phased by Beagle 5.1.
Usage
1
prep_phased(phased_geno, convert_letter = FALSE)
Arguments
phased_geno
phased genotype file from Beagle 5.1, the first nine columns contain basic information, the rest are genotype
convert_letter
convert allele from 0, 1 to letter in REF and ALF
Value
A list contain map and genotype information
JH-Zhou/HandyCNV documentation built on Dec. 18, 2021, 12:25 a.m.
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Description Usage Arguments Value
View source: R/get_haplotype.R
Description
This function used to prepare phased genotype file to standard format in 'HandyCNV' to get haplotype for any interested genomic region, The input file should phased by Beagle 5.1.
Usage
1 | prep_phased(phased_geno, convert_letter = FALSE)
|
Arguments
phased_geno |
phased genotype file from Beagle 5.1, the first nine columns contain basic information, the rest are genotype |
convert_letter |
convert allele from 0, 1 to letter in REF and ALF |
Value
A list contain map and genotype information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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