matrix_150: Emission probability matrices:GencodeV25:150bp
In JMF47/recountNNLSdata: Pre-computed model matrices used by recountNNLS for tx abundance estimate
Description
Format
Author(s)
Examples
Description
This is a list of the 19,932 emission probability
matrices that correspond to the coding genes of the GencodeV25 transcriptome
annotation. It is used to fit recountNNLS regression model for transcript
abundance estimation of experiments with 150bp read lengths.
Format
A list of length 19,932, where each entry is a matrix of
variable dimension corresponding to the name. Each row of the matrix
corresponds to a feature, and each column corresponds to a transcript.
Author(s)
Jack Fu jmfu@jhsph.edu
Examples
1
2
3
4
5
6
## Not run:
data(matrix_150)
head(names(matrix_150))
head(matrix_150[[1]])
## End(Not run)
JMF47/recountNNLSdata documentation built on May 19, 2019, 2:53 a.m.
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Description Format Author(s) Examples
Description
This is a list of the 19,932 emission probability
matrices that correspond to the coding genes of the GencodeV25 transcriptome
annotation. It is used to fit recountNNLS regression model for transcript
abundance estimation of experiments with 150bp read lengths.
Format
A list of length 19,932, where each entry is a matrix of
variable dimension corresponding to the name. Each row of the matrix
corresponds to a feature, and each column corresponds to a transcript.
Author(s)
Jack Fu jmfu@jhsph.edu
Examples
1 2 3 4 5 6 | ## Not run:
data(matrix_150)
head(names(matrix_150))
head(matrix_150[[1]])
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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