matrix_50: Emission probability matrices:GencodeV25:50bp

In JMF47/recountNNLSdata: Pre-computed model matrices used by recountNNLS for tx abundance estimate

Description

This is a list of the 19,932 emission probability matrices that correspond to the coding genes of the GencodeV25 transcriptome annotation. It is used to fit recountNNLS regression model for transcript abundance estimation of experiments with 50bp read lengths.

Format

A list of length 19,932, where each entry is a matrix of variable dimension corresponding to the name. Each row of the matrix corresponds to a feature, and each column corresponds to a transcript.

Author(s)

Jack Fu [e-mail]

Examples

## Not run: 
data(matrix_50)
head(names(matrix_50))
head(matrix_50[[1]])

## End(Not run)

JMF47/recountNNLSdata documentation built on May 19, 2019, 2:53 a.m.