OS_Stress_Space_Detailed: Detailed Oryza sativa Stress Space Based on Affymetrix Rice...

Description Usage Format Details Source


OS_Stress_Space_Detailed spans a 30-dimension physiological space constructed from 8 different Rice stress-response gene expression datasets from "Gene Expression Omnibus" (GEO).




A matrix with genes as rows and different physiological dimensions in columns. Gene Entrez IDs are stored in rownames and space-dimension names in colnames.


Here's the list of datasets used for making this Space: GSE14403, GSE15448, GSE16108, GSE21651, GSE24048, GSE25176, GSE26280, GSE6901

The difference between OS_Stress_Space and OS_Stress_Space_Detailed is that in OS_Stress_Space all stressed dimensions with the same stress type are summarized to make a universal axis for each stress type, while in the space of OS_Stress_Space_Detailed stress responses from different datasets have their own dedicated dimension.


https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=[GSEXXXX] (Replace GSEXXXX by one of the actual dataset series names listed in 'Details' section.)

JRC-COMBINE/PlantPhysioSpace documentation built on Nov. 25, 2020, 8:01 a.m.