Files in JacobLemieux/sars2phylo
Functions for analyzing SARS-CoV-2 phylogenetic data
.DS_Store
.Rhistory
.Rproj.user/9231C19D/build_options
.Rproj.user/9231C19D/pcs/files-pane.pper
.Rproj.user/9231C19D/pcs/source-pane.pper
.Rproj.user/9231C19D/pcs/windowlayoutstate.pper
.Rproj.user/9231C19D/pcs/workbench-pane.pper
.Rproj.user/9231C19D/rmd-outputs
.Rproj.user/9231C19D/saved_source_markers
.Rproj.user/9231C19D/sources/prop/10591C6D
.Rproj.user/9231C19D/sources/prop/13C47D8D
.Rproj.user/9231C19D/sources/prop/BDEC7F60
.Rproj.user/9231C19D/sources/prop/C8D5F050
.Rproj.user/9231C19D/sources/prop/CDECAB4D
.Rproj.user/9231C19D/sources/prop/F3C869AC
.Rproj.user/9231C19D/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
DESCRIPTION
NAMESPACE
R/sars2phylo.R
man/constructHaploTable.Rd
man/convertMonth.Rd
man/countByInterval.Rd
man/createSgenoTable.Rd
man/encodeGenotype.Rd
man/encodeLineage.Rd
man/encodeSgeno.Rd
man/extractS.Rd
man/logRegFit.Rd
man/plotCounts.Rd
man/plotLineage.Rd
man/plotProp.Rd
man/plotTop.Rd
man/plotVOC.Rd
man/plotVarWeekly.Rd
man/plotWeekly.Rd
man/readNextClade.Rd
man/readSampleSet.Rd
man/readTerra.Rd
man/relabel_DNAss.Rd
run_package.R
sars2phylo.Rproj
