plotCounts: plot absolute counts by timeInt
In JacobLemieux/sars2phylo: Functions for analyzing SARS-CoV-2 phylogenetic data
Description
Usage
Arguments
Value
Examples
Description
plot absolute counts by timeInt
Usage
1
plotCounts(SS, lineage, timeInt, smoother = FALSE)
Arguments
SS
dataframe of sample set, with one-hot encoding of each lineage as a column
lineage
character string of particular lineage
timeInt
time interval, usually weekly ("epidate")
smoother
display loess smoother
Value
creates a plot of proportion of lineage by time interval
Examples
1
plotCounts(ss, "B.1.1.7", "epidate");
JacobLemieux/sars2phylo documentation built on Dec. 18, 2021, 12:29 a.m.
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Description Usage Arguments Value Examples
Description
plot absolute counts by timeInt
Usage
1 | plotCounts(SS, lineage, timeInt, smoother = FALSE)
|
Arguments
SS |
dataframe of sample set, with one-hot encoding of each lineage as a column |
lineage |
character string of particular lineage |
timeInt |
time interval, usually weekly ("epidate") |
smoother |
display loess smoother |
Value
creates a plot of proportion of lineage by time interval
Examples
1 | plotCounts(ss, "B.1.1.7", "epidate");
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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