plotWeekly: plot lineages as successes by week (for accurate uncertainty...

In JacobLemieux/sars2phylo: Functions for analyzing SARS-CoV-2 phylogenetic data

Description

plot lineages as successes by week (for accurate uncertainty in logistic regression smoother)

Usage

plotWeekly(SS, lineage, timeInt, smoother = FALSE, logreg = FALSE)

Arguments

SS	dataframe of sample set, with one-hot encoding of each lineage as a column
lineage	character string specifying lineage of interest
timeInt	time interval, usually weekly ("epidate")
smoother	display loess smoother
logreg	display logistic regression smoother

Value

creates a plot of successes by week for a given lineage

Examples

plotWeekly(ss, "B.1.1.7", "epidate", logreg=TRUE);

JacobLemieux/sars2phylo documentation built on Dec. 18, 2021, 12:29 a.m.