Man pages for Jaugust7/scVisualizeR
A package containing useful functions for single cell analysis

cordNormUMAPGenerate new cds with UMAP coordinates in pData
cordUMAPGenerate new cds with UMAP coordinates in pData
lookupGeneIdReturns the gene ID given a gene short name as input
lookupGeneNameReturns the gene short name given a gene ID as input
myUMAPPlotGiven an exisiting UMAP embedding of scRNAseq data, returns...
myUMAPPlotMarkersGiven an exisiting UMAP embedding of scRNAseq data, returns...
PCpickerVisualize PC variance
plotUMAPGenerate a UMAP visualiztion using ggplot2
scnormNormalize gene counts by sequencing depth per cell
scnormUMAPGenerate a UMAP visualiztion using ggplot2
scUMAPGenerate a UMAP visualiztion using ggplot2
Jaugust7/scVisualizeR documentation built on Oct. 10, 2018, 3:49 a.m.