plotPatterns: Returns UMAP visualizations colored by pattern weight as...

In Jaugust7/scVisualizeR: A package containing useful functions for single cell analysis

Returns UMAP visualizations colored by pattern weight as determined by NNLM::nnmf()

Description

Returns UMAP visualizations colored by pattern weight as determined by NNLM::nnmf()

Usage

plotPatterns(
  cds,
  decomp,
  nPatterns = c(1:5),
  x_cord = "UMAP1",
  y_cord = "UMAP2",
  size = 0.5
)

Arguments

decomp	output from NNLM::nnmf()
nPatterns	a vector of patterns that you'd like to visualize
x_cord	the x cordinates to use for visualization ("UMAP1" by default)
y_cord	the y cordinates to use for visualization ("UMAP2" by default)
size	the size to use for the points
eset	an expression set or cell data set (CDS)

Value

Returns UMAP visualizations colored by pattern weight as determined by NNLM::nnmf()

Jaugust7/scVisualizeR documentation built on Jan. 13, 2023, 1:12 p.m.