deletion_alleles_plot: Plots unique deletion alleles and their "pileup" count...

In Jeremy37/rgenie: Analysis of GenIE Experiments

Plots unique deletion alleles and their "pileup" count profile separately for cDNA and gDNA.

Description

Plots unique deletion alleles and their "pileup" count profile separately for cDNA and gDNA.

Usage

deletion_alleles_plot(
  alignment_result,
  viewing_window = 40,
  color_by = "window"
)

Arguments

alignment_result	Result from a call to alignment_analysis.
viewing_window	Window on either size of the CRISPR cut site to show in the plot.
color_by	A string with one of the values: "none" (default), "window", or "sharing".

Value

Returns a ggplot object.

See Also

alignment_analysis

Examples

# Note: First run alignment_analysis()
# mul1_alignment_results is a pre-loaded result

deletion_alleles_plot(mul1_alignment_results[[1]])

Jeremy37/rgenie documentation built on Sept. 22, 2023, 10:17 a.m.