batch_file | Process the input file a batch of one batch |
format_filenames | Function to format filenames that can be used to unify the... |
format_pp_meta_age | To format ProteinPaint input meta data of age |
format_pp_meta_fusions | To format ProteinPaint input meta data of gender |
format_pp_meta_gender | To format ProteinPaint input meta data of gender |
fusions2oncoprinter | Function to convert fusion data to cbioportal Oncoprinter... |
fusions2pp | Function to convert fusion data to ProteinPaint format. |
fusions2pp_meta | Function to convert fusion data to ProteinPaint heatmap meta... |
fusions_filter | Fusions handler_data filter that can be used to prepare the... |
get_files_ctime | Function to check file create time and according the... |
get_files_mtime | Function to check file last change time and according the... |
get_pp_samplegroup | Function to get samplegroup file that can be pass to... |
get_split_seqs | Function to calculate the split regions by sections and total... |
make_option | Functions to enable our OptionParser to recognize specific... |
merge_table_files | Util function to merge multiple table files. |
muts2mutation_mapper | Function to convert mutation data to cbioportal... |
muts2oncoprinter | Function to convert mutation data to cbioportal Oncoprinter... |
muts2pp | Function to convert mutation data to ProteinPaint format. |
ngstk | ngstk can be used to facilitate the analysis of NGS data,... |
opt_parser | A function to create an instance of a parser object with... |
par_download | Function to download multiple file at the same time. |
parse_args | Parse command line options (optparse). |
parse_args2 | Parse command line options. |
print_help | Printing an usage message from an OptionParser object |
rbin | Function to generate executable files for R package |
set_colors | Function to get a series defined theme colors |
set_tools | Function to generate tools path object |
show_handlers | Function to show all avaliabe handler function |
show_mhandlers | Function to show all avaliabe mhandler function |
split_col_data | Data split function by colum |
split_list | Function to split list |
split_row_data | Data split function by row |
split_row_file | Function to split big file to a series small files (by row) |
supress_any_message | suppressWarnings(suppressMessages(...)) |
time_stamp | Function to generate time stamp in the files name or... |
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