Man pages for JhuangLab/ngstk
Next-Generation Sequencing (NGS) Data Analysis Toolkit

batch_fileProcess the input file a batch of one batch
format_filenamesFunction to format filenames that can be used to unify the...
format_pp_meta_ageTo format ProteinPaint input meta data of age
format_pp_meta_fusionsTo format ProteinPaint input meta data of gender
format_pp_meta_genderTo format ProteinPaint input meta data of gender
fusions2oncoprinterFunction to convert mutation data to Oncoprinter <URL:...
fusions2ppFunction to convert fusion data to ProteinPaint <URL:...
fusions2pp_metaFunction to convert fusion data to ProteinPaint heatmap meta...
fusions_filterFusions handler_data filter that can be used to prepare the...
get_files_ctimeFunction to check file create time and according the...
get_files_mtimeFunction to check file last change time and according the...
get_pp_samplegroupFunction to get samplegroup file that can be pass to...
get_split_seqsFunction to calculate the split regions by sections and total...
merge_table_filesUtil function to merge multiple table files.
muts2mutation_mapperFunction to convert mutation data to MutationMapper <URL:...
muts2oncoprinterFunction to convert mutation data to Oncoprinter <URL:...
muts2ppFunction to convert mutation data to ProteinPaint <URL:...
ngstkngstk can be used to facilitate the analysis of NGS data,...
set_colorsFunction to get a series defined theme colors
set_toolsFunction to generate tools path object
show_handlersFunction to show all avaliabe handler function
show_mhandlersFunction to show all avaliabe mhandler function
split_col_dataData split function by colum
split_listFunction to split list
split_row_dataData split function by row
split_row_fileFunction to split big file to a series small files (by row)
JhuangLab/ngstk documentation built on Dec. 5, 2017, 12:08 p.m.