format_pp_meta_gender: To format ProteinPaint input meta data of gender

In JhuangLab/ngstk: Next-Generation Sequencing (NGS) Data Analysis Toolkit

Description

To format ProteinPaint input meta data of gender

Usage

format_pp_meta_gender(raw_meta, outfn = NULL, gender_group = "Gender",
  male_value = "Male", female_value = "Female",
  male_color = "#c20b01", female_color = "#196abd", ...)

Arguments

raw_meta	A data.frame contain cols of 'sample', 'term', 'group', 'value', 'color' and 'legendorder'
outfn	Output file, default is NULL and not output to file
gender_group	Name of age group, default is 'Gender'
male_value	Value of male, default is 'Male'
female_value	Value of female, default is 'Female'
male_color	Color of male, default is '#c20b01'
female_color	Color of female, default is '#196abd'
...	Parameters pass to set_colors

Value

A data frame

Examples

meta_template <- system.file('extdata', 
'demo/proteinpaint/heatmap_meta_template.txt', package = 'ngstk')
raw_meta <- read.table(meta_template, sep = '\t', header = TRUE)
term <- group <- 'Gender'
raw_meta$term <- term
raw_meta$group <- group
raw_meta$value <- c(rep(c('Male', 'Female'), 3), 'Male')
meta_gender <- format_pp_meta_gender(raw_meta)

JhuangLab/ngstk documentation built on May 28, 2019, 12:43 p.m.