compartmentData: Calculate enrichment of subcellular compartment
In JoWatson2011/shiny_subcellularvis: What the Package Does (One Line, Title Case)
View source: R/runSubcellulaRvis.R
Description
Calculate enrichment of subcellular compartment
Usage
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compartmentData(
genes,
bkgd = NULL,
trafficking = F,
subAnnots = F,
organism = c("Human", "Mouse", "Drosophila", "Yeast", "Rat", "Xenopus")
)
Arguments
genes
input genes (HGNC symbol) as character vector
bkgd
background population. Defaults to size of species library
trafficking
Logical; Calculate enrichment within endolysosome system?
subAnnots
Logical; Calculate enrichment on all terms, not summarised
organism
One of "Human", "Mouse", "Drosophila", "Yeast", "Rat", "Xenopus"
JoWatson2011/shiny_subcellularvis documentation built on Dec. 18, 2021, 1:38 a.m.
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View source: R/runSubcellulaRvis.R
Description
Calculate enrichment of subcellular compartment
Usage
1 2 3 4 5 6 7 | compartmentData(
genes,
bkgd = NULL,
trafficking = F,
subAnnots = F,
organism = c("Human", "Mouse", "Drosophila", "Yeast", "Rat", "Xenopus")
)
|
Arguments
genes |
input genes (HGNC symbol) as character vector |
bkgd |
background population. Defaults to size of species library |
trafficking |
Logical; Calculate enrichment within endolysosome system? |
subAnnots |
Logical; Calculate enrichment on all terms, not summarised |
organism |
One of "Human", "Mouse", "Drosophila", "Yeast", "Rat", "Xenopus" |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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