cnvGSAlogRegTest: Performing the logistic regression tests on the CNV data.

In JoeLugo/cnvGSA: Gene Set Analysis of (Rare) Copy Number Variants

Description

This test uses 4 different correction models and requires a case control study. It looks at odds ratios and calculates statistics for the gene-set collection.

Usage

cnvGSAlogRegTest(cnvGSA.in, cnvGSA.out)

Arguments

cnvGSA.in	A CnvGSAInput S4 object.
cnvGSA.out	A CnvGSAOutput S4 object.

Value

A list of one or two objects depending on whether or not the user includes the known loci in the analysis. Each object in the list contains the regression results for each gene set.

Examples

library(cnvGSAdata)
data(cnvGSA_output_example)
## See vignette for full details and worked example

JoeLugo/cnvGSA documentation built on May 28, 2019, 12:55 p.m.