ceRNAmiRNAfun: ceRNAmiRNAfun: An analysis R package to find out miRNA and...
In JohnMengChun/ceRNAmiRNAfun: A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets
Description
sliding_windows
segcluster_peakmerge
miRhubgene
miRhubgeneplot
Description
The ceRNAmiRNAfun package is used to identify miRNA and ceRNA triplets..
The ceRNAmiRNAfun package provides a whole workflow, which contains important
functions: 'sliding_windows', 'segcluster_peakmerge', 'miRhubgene',
'miRhubgeneplot'
sliding_windows
The function will calculate correlation coefficients
within each window, a sliding mover that contains putative ceRNA triplets
composed of a miRNA and several genes.
segcluster_peakmerge
cluster noisy correlation into neighboring
regions of distinct correlation levels. And then do the peak merging by
considering low probability of multi-peaks occurring. Also, the segments
with few samples detected by circular binary segmentation which are less
than three and make no sense to the interactions would merge to a single
peak.
miRhubgene
The miRhubgene function is used to sort the
information of miRNA and ceRNA to find out triplets.
miRhubgeneplot
The miRhubgeneplot function is used to plot the
top miRNA to see its expression situation.
JohnMengChun/ceRNAmiRNAfun documentation built on May 31, 2019, 5:09 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description sliding_windows segcluster_peakmerge miRhubgene miRhubgeneplot
Description
The ceRNAmiRNAfun package is used to identify miRNA and ceRNA triplets.. The ceRNAmiRNAfun package provides a whole workflow, which contains important functions: 'sliding_windows', 'segcluster_peakmerge', 'miRhubgene', 'miRhubgeneplot'
sliding_windows
The function will calculate correlation coefficients within each window, a sliding mover that contains putative ceRNA triplets composed of a miRNA and several genes.
segcluster_peakmerge
cluster noisy correlation into neighboring regions of distinct correlation levels. And then do the peak merging by considering low probability of multi-peaks occurring. Also, the segments with few samples detected by circular binary segmentation which are less than three and make no sense to the interactions would merge to a single peak.
miRhubgene
The miRhubgene function is used to sort the information of miRNA and ceRNA to find out triplets.
miRhubgeneplot
The miRhubgeneplot function is used to plot the top miRNA to see its expression situation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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