miRhubgene: sort the information to find out the triplets.

In JohnMengChun/ceRNAmiRNAfun: A package of creating an algorithm of identifying microRNA-competing endogenous RNA triplets

Description

This function will sort the information of miRNA and ceRNA to find out triplets.

Usage

miRhubgene(dictionary, Result_TCGA_LUSC)

Arguments

dictionary	miRNA and the corresponding genes' combination in list format, with miRNA name in the first column and the corresponding genes in the second column
Result_TCGA_LUSC	a list of dataframe formats with miRNA,candidate ceRNAs,and their locations and number of segmentation based on segcluster_peakmerge function.

Value

outputm a dataframe formats with miRNA names with the number of bridging ceRNA triplets and the corresponding genes with the number of ceRNA triplets.

Examples

## Use the internal dataset

data("dictionary", package = "ceRNAmiRNAfun", envir = environment())
data("Result_TCGA_LUSC", package = "ceRNAmiRNAfun", envir = environment())

## use miRhubgene to merge out the bridging miRNA and hub genes
miRhubgene(dictionary,Result_TCGA_LUSC)
  

JohnMengChun/ceRNAmiRNAfun documentation built on May 31, 2019, 5:09 p.m.