loglikSetup: setup for computing the loglikelihood for the model Assumes...

In JonasWallin/PolyMixed:

setup for computing the loglikelihood for the model Assumes equally spaced covariates Y \sim N(X_k\beta + X \gamma, \sigma_Y^2 I_n \times n) \gamma \sim N(u, \tau^2 I_p \times p) u = [u_1,...,u_n_c] u_i \sim N(\mu_0, \sigma^2_u 1 @param Y (n x 1) the data @param X (n x p) the gene matrixs @param Xk (n x k) the covariates (for \beta) if no covariates set NULL @param nc (int - matrix) number of chromosones, if null simpler model

Description

@param SVDX (list) output of SVD(X)

Usage

loglikSetup(Y, X, Xk = NULL, nc = NULL, SVDX = NULL)

JonasWallin/PolyMixed documentation built on April 8, 2023, 4:26 p.m.