JordanVeldboom/compartmap
A/B compartment inference from ATAC-seq and methylation array data

Package index
Search the JordanVeldboom/compartmap package
Vignettes
Functions
106
Source code
28
Man pages
48
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JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data
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API

API for JordanVeldboom/compartmap
A/B compartment inference from ATAC-seq and methylation array data

Global functions
.binarizeMatrix Source code
.getLogitFracMeth Source code
.getResampledGlobalMeans Source code
.getSmoothedLogitFrac Source code
.n_approx Man page Source code
.p_approx Man page Source code
.resampleMatrix Source code
.shrinkATAC Source code
.shrinkArrays Source code
.shrinkBS Source code
.squeezeit Source code
.tfidf Source code
.unitarize Source code
.z Man page Source code
agrestiCoullCI Man page Source code
array.data.chr14 Man page
bootstrapCompartments Man page Source code
checkAssayType Man page Source code
cleanAssayCols Man page Source code
cleanAssayRows Man page Source code
condenseRE Man page Source code
condenseSE Man page Source code
extractOpenClosed Man page Source code
fexpit Man page Source code
filterCells Man page Source code
filterCompartments Man page Source code
filterOpenSea Man page Source code
filtered.data.chr14 Man page
fisherZ Man page Source code
fixCompartments Man page Source code
flogit Man page Source code
getABSignal Man page Source code
getATACABsignal Man page Source code
getArrayABsignal Man page Source code
getAssayNames Man page Source code
getBSABsignal Man page Source code
getBinMatrix Man page Source code
getChrs Man page Source code
getCorMatrix Man page Source code
getGlobalMeans Man page Source code
getMatrixBlocks Man page Source code
getOpenSeas Man page Source code
getSVD Man page
getSeqLengths Man page Source code
getShrinkageTargets Man page Source code
hdf5TFIDF Man page Source code
ifisherZ Man page Source code
imputeKNN Man page Source code
meanSmoother Man page Source code
plotAB Man page Source code
precomputeBootstrapMeans Man page Source code
preprocessArrays Man page Source code
preprocessBSseq Man page Source code
removeEmptyBoots Man page Source code
scCompartments Man page Source code
shrinkBins Man page Source code
smoothBSCounts Man page Source code
sparseToDenseMatrix Man page Source code
summarizeBootstraps Man page Source code
transformTFIDF Man page Source code
JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.

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