fixCompartments: Invert, or "fix", compartments that have a minimum confidence...
In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data
Description
Usage
Arguments
Value
View source: R/fixCompartments.R
Description
Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)
Usage
1
fixCompartments(obj, min.conf = 0.8, parallel = FALSE, cores = 1)
Arguments
obj
Input RaggedExperiment or output of condenseSE
min.conf
Minimum confidence score to use
parallel
Whether to run in parallel
cores
How many cores to use if running in parallel
Value
A "fixed" set of compartments
JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.
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Description Usage Arguments Value
View source: R/fixCompartments.R
Description
Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)
Usage
1 | fixCompartments(obj, min.conf = 0.8, parallel = FALSE, cores = 1)
|
Arguments
obj |
Input RaggedExperiment or output of condenseSE |
min.conf |
Minimum confidence score to use |
parallel |
Whether to run in parallel |
cores |
How many cores to use if running in parallel |
Value
A "fixed" set of compartments
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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