filterCompartments: Filter compartments using confidence estimates and eigenvalue...
In JordanVeldboom/compartmap: A/B compartment inference from ATAC-seq and methylation array data
Description
Usage
Arguments
Value
View source: R/filterCompartments.R
Description
Filter compartments using confidence estimates and eigenvalue thresholds
Usage
1
filterCompartments(obj, min.conf = 0.7, min.eigen = 0.02)
Arguments
obj
Output of condenseSE or fixCompartments
min.conf
Minimum confidence estimate to use when filtering
min.eigen
Minimum absolute eigenvalue to use when filtering
Value
A filtered/subset of the input object/list
JordanVeldboom/compartmap documentation built on July 3, 2020, 6:32 p.m.
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Description Usage Arguments Value
View source: R/filterCompartments.R
Description
Filter compartments using confidence estimates and eigenvalue thresholds
Usage
1 | filterCompartments(obj, min.conf = 0.7, min.eigen = 0.02)
|
Arguments
obj |
Output of condenseSE or fixCompartments |
min.conf |
Minimum confidence estimate to use when filtering |
min.eigen |
Minimum absolute eigenvalue to use when filtering |
Value
A filtered/subset of the input object/list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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