spectraCreate: Deconvolute both MS2 and MS1 levels scans adductomics
In JosieLHayes/adductomicsR: Processing of adductomic mass spectral datasets
Description
Usage
Arguments
Value
Description
Deconvolute both MS2 and MS1 levels scans adductomics
Usage
1
2
spectraCreate(MS2file = NULL, TICfilter = 10000, DNF = 2, minInt =
100, minPeaks = 5)
Arguments
MS2file
character vector of mzXML file locations
TICfilter
numeric minimimum total ion current of an MS/MS scan. Any
MS/MS scan below this value will be filtered out (default=0).
DNF
dynamic noise filter minimum signal to noise threshold
(default = 2), calculated as the ratio between the linear model predicted
intensity value and the actual intensity.
minInt
numeric minimum intensity value
minPeaks
minimum number of signal peaks following dynamic
noise filtration (default = 5).
Value
list of MS2 spectra
JosieLHayes/adductomicsR documentation built on May 5, 2019, 9:43 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Deconvolute both MS2 and MS1 levels scans adductomics
Usage
1 2 | spectraCreate(MS2file = NULL, TICfilter = 10000, DNF = 2, minInt =
100, minPeaks = 5)
|
Arguments
MS2file |
character vector of mzXML file locations |
TICfilter |
numeric minimimum total ion current of an MS/MS scan. Any MS/MS scan below this value will be filtered out (default=0). |
DNF |
dynamic noise filter minimum signal to noise threshold (default = 2), calculated as the ratio between the linear model predicted intensity value and the actual intensity. |
minInt |
numeric minimum intensity value |
minPeaks |
minimum number of signal peaks following dynamic noise filtration (default = 5). |
Value
list of MS2 spectra
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.