outputPeakTable: output peak table from AdductQuantif object

In JosieLHayes/adductomicsR: Processing of adductomic mass spectral datasets

Description

output peak table from AdductQuantif object

Usage

outputPeakTable(object = NULL, outputDir = NULL)

Arguments

object	a 'AdductQuantif' class object
outputDir	character full path to a directory to output the peak to default is the current working directory

Value

a peaktable with number of rows equal to the number of adducts quantified and 14 peak group information columns plus a number of columns equal to the number of samples quantified. The peak table is saved as a csv file in the output directory named: adductQuantif_peakList_'todays date'.csv. The peak table is also returned to the R session and can be assigned to an object.

Examples

eh = ExperimentHub();
Temp = query(eh, c("adductData", "adductQuant", "Rda"))[[1]];
outputPeakTable(object=Temp)

JosieLHayes/adductomicsR documentation built on May 5, 2019, 9:43 p.m.