adapt_tsne | wrapper for rtsne function that will set perplexity to 1 if... |
ccrepe_to_geomnet | filter ccrepe object and prepare for geomnet plotting |
cum_dist_to_targets | Cumulative distance to targets in a distance matrix |
darken | Return a darker hue of a color |
DESeq_cov_asso | DESeq2 covariate associations with OTUs |
DESeq_difabund | DESeq2 differential abundance for all treatments compared to... |
Deseq.quickplot | Quickly plot Deseq2 results |
extract_mothur_tax | Extract mothur SILVA formatted taxonomy |
gather_nodes | Collect type information for nodes in a network |
iterative_dist_remove | iteratively remove objects from a distance matrix and plot at... |
iter_plots | plots the output of iterative_NMDS |
lighten | Return a lighter hue of a color |
min_dist_to_targets | Minimum distance to targets for each other entry in a... |
NMDS_ellipse | Generate NMDS points, group centroids and standard error... |
otu_tax_labels | swap OTU designations with 'genus:OTU' |
pairwise.adonis | this function taken from... |
prune_graph | Remove small unconnected subnetworks from a network |
qpcr_DDCT | CTs to log2 fold change relative to controls |
qpcr_DDCT_LOD | CTs to log2 fold change relative to controls with LOD... |
rcorr_to_geomnet | filter rcorr object and prepare for geomnet plotting |
read_mash_tri | Read in a mash output lower triangle file as a dist object |
topGO_wrapper | Wrapper for TopGO - GO term enrichment analysis |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.