otu_tax_labels: swap OTU designations with 'genus:OTU'
In Jtrachsel/funfuns: Functions I Use (Title Case)
Description
Usage
Arguments
Value
Examples
Description
swap OTU designations with 'genus:OTU'
Usage
1
otu_tax_labels(mothur_tax)
Arguments
mothur_tax
A mothur taxonomy file read in by "extract_mothur_tax()"
Value
Returns a named vector. The values of this vector are new names for each OTU. These are made by concatenating the entry in the
'Genus' column with the entry in the 'OTU' column separated by a ':'. This named vector can then be used to get the new names for
any subset of these OTUs. I use this function when I've got some plot involving a few OTUs and I want to label them with both an OTU number and
some taxonomy information.
Examples
1
#soon
Jtrachsel/funfuns documentation built on Aug. 8, 2021, 7:31 p.m.
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Description Usage Arguments Value Examples
Description
swap OTU designations with 'genus:OTU'
Usage
1 | otu_tax_labels(mothur_tax)
|
Arguments
mothur_tax |
A mothur taxonomy file read in by "extract_mothur_tax()" |
Value
Returns a named vector. The values of this vector are new names for each OTU. These are made by concatenating the entry in the 'Genus' column with the entry in the 'OTU' column separated by a ':'. This named vector can then be used to get the new names for any subset of these OTUs. I use this function when I've got some plot involving a few OTUs and I want to label them with both an OTU number and some taxonomy information.
Examples
1 | #soon
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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